Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 4.2e-306 1053.9 541 100.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 3.9e-296 1020.8 598 90.1
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.9e-295 1018.5 598 90.0
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 3.4e-284 981.1 590 86.8
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.3e-283 979.2 606 85.6
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 4.2e-274 947.6 587 85.0
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 7.0e-269 930.2 615 81.0
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 8.0e-265 916.8 597 78.6
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 4.0e-264 914.4 597 79.2
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 3.4e-263 911.4 597 78.4
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 7.0e-261 903.7 602 77.4
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 2.7e-260 901.7 574 79.3
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.5e-258 895.2 556 79.9
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 5.5e-258 894.0 598 77.6
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 9.8e-255 883.2 634 73.0
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.8e-254 881.7 597 76.4
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 4.9e-254 880.9 597 76.2
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 8.3e-254 880.2 556 78.6
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.4e-253 879.4 594 75.3
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 2.4e-253 878.6 597 74.7
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.6e-252 875.9 597 75.2
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 2.7e-252 875.2 598 74.7
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 4.5e-252 874.4 597 75.4
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 4.5e-252 874.4 597 74.7
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 7.7e-252 873.6 597 73.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 2.3e-251 872.1 597 74.4
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.1e-250 869.8 597 74.5
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 2.5e-250 868.6 597 73.4
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 3.3e-250 868.2 597 73.4
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 4.3e-250 867.8 597 73.4
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 5.6e-250 867.5 646 71.4
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 5.6e-250 867.5 597 72.9
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 5.6e-250 867.5 556 77.5
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 7.3e-250 867.1 597 74.4
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 9.5e-250 866.7 597 73.5
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 9.5e-250 866.7 597 72.2
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.6e-249 865.9 597 72.9
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 3.6e-249 864.8 594 76.9
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 6.1e-249 864.0 597 73.2
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 8.0e-249 863.6 598 73.2
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.0e-248 861.7 585 74.4
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 4.0e-248 861.3 598 74.2
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.8e-248 860.5 585 74.4
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.9e-248 860.1 585 74.5
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.9e-248 860.1 585 74.5
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 1.5e-247 859.4 595 73.4
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.7e-246 854.7 595 73.9
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 4.9e-246 854.4 594 73.2
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 4.9e-246 854.4 597 73.0
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 6.4e-246 854.0 636 70.6
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.4e-245 852.8 594 73.2
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 2.4e-245 852.0 556 78.2
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.0e-244 849.0 595 72.6
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 3.5e-244 848.2 584 74.1
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 7.8e-244 847.0 593 73.2
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 3.9e-243 844.7 572 75.9
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.8e-240 833.9 572 74.5
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 6.8e-240 833.9 582 73.5
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 8.9e-240 833.6 571 74.6
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-238 829.7 569 74.7
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 2.9e-238 828.6 595 70.8
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 4.9e-238 827.8 597 71.9
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 6.4e-238 827.4 594 70.5
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 8.3e-238 827.0 584 72.3
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 5.4e-237 824.3 556 75.4
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.3e-235 818.9 597 70.2
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 2.3e-235 818.9 597 70.0
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.5e-234 816.2 619 68.3
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.5e-234 815.5 597 70.4
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 5.6e-234 814.3 601 71.2
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 5.6e-234 814.3 595 70.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.6e-233 812.8 563 74.4
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 8.1e-233 810.4 596 68.3
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 1.4e-232 809.7 587 71.0
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 1.4e-232 809.7 587 71.0
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 3.1e-232 808.5 587 70.7
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 6.8e-232 807.4 597 69.8
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-231 805.8 597 69.8
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 2.6e-231 805.4 597 69.2
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 4.4e-231 804.7 597 69.3
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 1.3e-230 803.1 596 70.0
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 7.1e-229 797.3 607 68.4
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 1.7e-227 792.7 600 67.8
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 8.6e-227 790.4 598 70.1
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 7.3e-226 787.3 563 72.3
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.6e-225 786.2 598 68.6
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.7e-225 784.6 498 79.3
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 5.2e-224 781.2 607 67.2
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 8.9e-224 780.4 548 74.3
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 4.1e-221 771.5 548 73.7
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.9e-219 765.0 581 70.4
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 5.1e-219 764.6 530 72.8
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 3.1e-216 755.4 593 66.3
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.1e-216 755.4 590 67.1
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.6e-212 741.5 508 76.0
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.8e-212 740.7 595 64.4
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.3e-211 739.2 595 63.7
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 3.0e-211 738.8 579 68.7
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 3.6e-209 731.9 595 63.0
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 1.8e-203 713.0 627 62.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.3e-195 686.8 510 70.6
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 7.4e-194 681.0 606 61.7
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.1e-193 679.5 547 66.0
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 2.1e-185 652.9 579 62.2
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 2.7e-180 636.0 606 56.1
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 6.3e-177 624.8 412 76.7
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 5.5e-173 611.7 413 77.5
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 2.7e-172 609.4 595 57.0
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 4.8e-169 598.6 577 54.4
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 4.2e-165 585.5 609 52.5
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 1.1e-162 577.4 593 52.8
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 1.2e-148 530.8 390 71.3
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 5.4e-144 515.4 317 81.7
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 2.9e-134 483.0 525 52.0
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 3.4e-130 469.5 459 61.0
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 3.9e-118 429.5 379 57.5
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 1.1e-117 427.9 314 71.0
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 6.8e-115 418.7 312 69.2
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 1.9e-109 400.6 282 69.9
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.5e-106 391.0 328 64.3
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.9e-105 386.7 317 63.1
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 3.1e-99 366.7 219 78.1
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 9.9e-98 361.7 625 37.0
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.4e-97 359.0 300 62.0
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.9e-93 347.4 263 65.0
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 7.3e-93 345.5 277 65.3
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 1.2e-79 301.6 193 75.6
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 5.6e-77 292.7 715 30.9
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 8.2e-76 288.9 203 69.5
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 5.3e-75 286.2 245 62.0
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 2.0e-74 284.3 242 63.6
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 1.6e-71 274.6 174 75.9
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.2e-68 264.2 241 61.4
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 4.1e-67 260.0 168 77.4
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.1e-64 251.9 193 69.4
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 1.1e-61 241.9 206 65.0
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.7e-60 236.9 254 53.5
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-59 233.8 228 52.2
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 5.0e-57 226.5 723 26.4
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 1.5e-50 204.9 133 78.2
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 7.7e-50 202.6 180 61.1
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.0e-46 190.7 116 75.9
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 1.1e-45 188.7 121 76.0
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 2.2e-44 184.5 125 72.0
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 2.4e-43 181.0 114 81.6
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 4.5e-42 176.8 131 64.1
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 6.7e-38 162.9 148 60.1
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 3.1e-35 154.1 118 67.8
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.1e-32 145.6 159 50.9
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 4.8e-28 130.2 506 25.7
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 1.1e-27 129.0 73 82.2
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 2.7e-26 124.4 119 62.2
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 4.7e-23 113.6 84 69.0
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 8.9e-22 109.4 119 55.5
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 2.8e-20 104.4 215 35.3
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 2.4e-19 101.3 82 63.4
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 9.2e-19 99.4 61 75.4
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.6e-17 92.8 56 83.9
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-16 92.0 86 62.8
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.9e-16 91.7 51 82.4
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 4.3e-16 90.5 58 70.7
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 9.8e-13 79.3 82 53.7
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.4e-11 74.7 161 36.6
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 2.0e-10 71.6 41 80.5
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 3.5e-10 70.9 44 79.5
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 3.3e-08 64.3 51 64.7
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 9.5e-08 62.8 47 63.8
Solyc01g013980.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.2e-07 62.4 40 75.0
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 4.7e-07 60.5 70 50.0
EL10Ac5g10990 Beta vulgaris HOM05D004566 ORTHO05D006041 8.0e-07 59.7 350 22.0
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 8.9e-06 56.2 70 45.7


User provided reference genes

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