Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 2.5e-278 961.4 472 100.0
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 5.5e-270 933.7 472 97.0
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 1.8e-268 928.7 472 96.0
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.3e-250 869.4 472 89.4
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 2.8e-245 851.7 479 88.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.8e-245 851.7 472 88.1
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 2.5e-238 828.6 469 86.4
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 3.3e-198 695.3 476 70.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 1.4e-193 679.9 478 69.5
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.1e-192 676.0 475 69.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.0e-191 673.7 470 69.4
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.0e-191 673.7 485 68.0
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.3e-190 668.3 478 68.8
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 4.8e-189 664.8 472 68.0
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 8.1e-189 664.1 472 67.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.1e-188 663.7 477 67.9
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.1e-188 662.1 480 67.1
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 5.3e-188 661.4 471 69.0
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.5e-187 659.8 477 67.5
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.0e-187 659.4 474 67.5
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 2.6e-187 659.1 471 68.2
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 3.4e-187 658.7 491 66.6
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 4.5e-187 658.3 473 67.4
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.7e-186 656.4 472 68.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 6.4e-186 654.4 473 67.2
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 9.3e-185 650.6 476 67.4
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 3.5e-184 648.7 478 66.7
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 6.0e-184 647.9 477 66.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 7.9e-184 647.5 477 66.5
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.8e-183 646.4 479 66.6
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 8.7e-183 644.0 475 65.5
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 5.6e-182 641.3 471 66.9
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 2.1e-181 639.4 472 65.9
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 2.4e-180 636.0 475 66.3
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 5.3e-180 634.8 469 65.5
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 9.0e-180 634.0 475 65.5
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.5e-179 633.3 475 64.8
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.0e-179 632.9 473 65.8
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 5.8e-179 631.3 476 64.9
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 5.8e-179 631.3 474 65.0
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 5.8e-179 631.3 488 63.5
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 2.9e-178 629.0 446 68.4
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 6.5e-178 627.9 477 63.9
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 8.4e-178 627.5 471 65.0
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.1e-177 627.1 483 62.7
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.4e-177 626.7 486 65.6
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.9e-177 626.3 473 65.8
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 5.5e-177 624.8 483 64.0
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 5.5e-177 624.8 483 62.1
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 7.1e-177 624.4 483 63.6
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.2e-176 623.6 472 64.4
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.6e-176 623.2 479 64.7
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.7e-176 622.5 473 64.7
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 2.7e-176 622.5 485 62.7
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 3.5e-176 622.1 480 62.1
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 6.0e-176 621.3 483 62.5
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 7.9e-176 620.9 485 62.3
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 5.1e-175 618.2 474 64.3
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.1e-174 617.1 485 61.9
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.5e-174 616.7 485 61.9
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.9e-174 616.3 483 62.1
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.9e-174 616.3 485 61.9
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 3.3e-174 615.5 473 65.5
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.3e-173 613.6 472 64.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 3.7e-173 612.1 474 63.9
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 6.3e-173 611.3 483 62.3
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 8.2e-173 610.9 469 64.6
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.8e-172 609.8 472 64.4
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 4.1e-172 608.6 478 65.9
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 4.5e-171 605.1 479 63.0
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 5.9e-171 604.7 476 63.7
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 3.8e-170 602.1 496 63.5
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 5.5e-169 598.2 471 63.5
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 1.3e-162 577.0 477 63.3
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 2.2e-162 576.2 473 61.7
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.4e-161 573.5 475 61.5
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 3.3e-158 562.4 473 59.8
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 4.8e-157 558.5 477 59.1
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 2.6e-155 552.7 451 59.4
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.3e-154 550.4 479 58.2
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 6.5e-154 548.1 492 58.3
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.6e-147 526.2 373 67.3
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 2.2e-146 523.1 387 63.8
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 4.7e-136 488.8 319 72.7
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 8.8e-135 484.6 471 52.4
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.7e-133 480.3 338 68.3
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 4.1e-132 475.7 382 61.8
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.3e-125 454.1 316 68.0
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 3.5e-123 446.0 437 50.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 4.9e-117 425.6 490 45.1
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 5.6e-105 385.6 425 46.8
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.9e-101 372.5 255 70.6
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 3.3e-97 359.8 406 44.1
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 4.3e-97 359.4 436 44.5
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 2.4e-95 353.6 381 44.9
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.7e-93 347.4 258 65.5
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 3.5e-91 339.7 269 62.8
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.1e-89 334.7 319 55.5
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.9e-89 334.0 274 61.3
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 4.3e-89 332.8 361 47.6
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.6e-88 329.7 299 55.9
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 9.0e-87 325.1 239 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 1.2e-86 324.7 393 41.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 1.0e-82 311.6 444 40.8
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 7.1e-76 288.9 219 61.6
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 6.2e-72 275.8 243 58.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 3.1e-63 246.9 236 55.5
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 5.3e-63 246.1 201 61.2
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 9.3e-60 235.3 225 54.2
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 6.5e-53 212.6 116 90.5
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.1e-51 207.6 186 58.6
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 9.7e-49 198.7 118 78.8
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 6.9e-47 192.6 118 77.1
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 3.0e-42 177.2 100 91.0
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 1.8e-26 124.8 108 58.3
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-24 117.9 117 51.3
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.2e-08 64.7 48 68.8
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 4.9e-08 63.5 44 65.9
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 3.2e-07 60.8 54 51.9
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 5.4e-07 60.1 198 26.3
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 9.2e-07 59.3 52 55.8
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 9.2e-07 59.3 52 55.8


User provided reference genes

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