Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.4e-150 536.2 254 100.0
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.4e-147 525.4 254 98.0
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 9.6e-120 433.7 250 84.8
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.2e-115 418.3 250 82.8
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 7.1e-115 417.5 243 81.9
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 7.9e-114 414.1 205 93.2
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.5e-107 392.5 191 95.8
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 1.3e-100 370.2 233 71.2
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.7e-100 369.8 237 70.0
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.2e-98 363.6 219 74.4
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.2e-98 363.6 222 74.8
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 2.7e-98 362.5 223 72.6
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 2.7e-98 362.5 244 67.6
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 6.1e-98 361.3 219 74.0
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 6.1e-98 361.3 219 72.6
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 3.9e-97 358.6 240 68.3
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 6.7e-97 357.8 223 71.7
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.5e-96 356.7 220 74.1
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 2.5e-96 355.9 233 71.2
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 3.3e-96 355.5 229 70.7
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 4.3e-96 355.1 228 70.6
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 5.7e-96 354.8 233 69.5
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 5.7e-96 354.8 220 71.4
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 5.7e-96 354.8 229 69.9
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.3e-95 353.6 251 66.1
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-95 353.2 255 65.9
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-95 353.2 255 65.9
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 3.7e-95 352.1 219 72.6
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.1e-94 350.5 223 72.6
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 2.4e-94 349.4 249 65.9
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 3.1e-94 349.0 218 71.1
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 4.1e-94 348.6 227 70.0
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 1.5e-93 346.7 253 66.8
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 2.0e-93 346.3 214 74.8
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 2.0e-93 346.3 230 69.6
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 3.4e-93 345.5 231 68.0
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 4.5e-93 345.1 247 66.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 4.5e-93 345.1 247 66.0
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 4.5e-93 345.1 247 66.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.5e-93 345.1 237 67.9
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 4.5e-93 345.1 229 69.0
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 7.7e-93 344.4 249 65.5
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 7.7e-93 344.4 219 71.2
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.0e-92 344.0 227 69.2
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.3e-92 343.6 231 67.1
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 1.3e-92 343.6 225 69.3
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 1.3e-92 343.6 227 68.7
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.7e-92 343.2 228 68.0
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.7e-92 343.2 237 67.9
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 2.2e-92 342.8 216 71.8
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.9e-92 342.4 222 69.4
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 2.9e-92 342.4 252 64.3
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 2.9e-92 342.4 241 67.2
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.1e-91 340.5 224 71.4
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-91 340.1 236 66.1
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.9e-91 339.7 221 70.1
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.9e-91 339.7 218 70.6
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 4.2e-91 338.6 259 65.6
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 5.5e-91 338.2 231 67.5
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 9.4e-91 337.4 204 72.5
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 1.2e-90 337.0 223 69.5
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 2.7e-90 335.9 217 69.6
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 2.7e-90 335.9 238 66.8
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 4.7e-90 335.1 222 69.4
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 2.0e-88 329.7 219 68.9
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 2.6e-88 329.3 228 67.5
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 9.7e-88 327.4 231 66.2
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.7e-87 326.6 231 66.7
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 4.8e-87 325.1 231 65.8
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 6.3e-87 324.7 249 62.2
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 8.2e-87 324.3 239 63.2
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 8.2e-87 324.3 215 67.9
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.1e-86 323.9 237 63.3
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.8e-86 323.2 239 63.2
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 5.3e-86 321.6 230 65.2
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 1.6e-85 320.1 216 65.7
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.5e-85 318.5 218 67.9
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 4.5e-85 318.5 226 66.8
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 2.9e-84 315.8 237 61.6
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 3.8e-84 315.5 222 64.4
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 3.8e-84 315.5 216 66.7
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 1.1e-83 313.9 264 58.3
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 3.2e-83 312.4 237 60.3
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 1.6e-82 310.1 182 74.2
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.0e-81 305.8 237 62.0
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-78 297.4 201 67.7
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.2e-74 283.9 170 77.6
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 6.1e-74 281.6 171 77.8
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 2.8e-71 272.7 181 68.0
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.1e-70 270.8 169 74.6
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.7e-68 263.5 180 68.3
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.7e-68 263.5 148 77.7
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 2.9e-68 262.7 238 58.0
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.4e-65 253.8 170 70.6
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.2e-65 251.9 172 64.0
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.4e-62 243.8 166 68.7
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 2.4e-62 243.0 163 73.6
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 7.0e-62 241.5 154 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.8e-57 226.9 305 39.0
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.1e-51 207.6 270 40.0
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 2.8e-50 203.0 225 48.9
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.3e-43 179.1 114 73.7
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.2e-37 161.0 179 41.3
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 2.8e-34 149.8 137 51.1
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 5.8e-32 142.1 188 40.4
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 9.9e-32 141.4 113 65.5
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.2e-31 140.2 93 61.3
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 8.1e-18 95.1 68 69.1
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.4e-17 94.4 96 56.2
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 4.9e-15 85.9 63 69.8
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.9e-14 84.0 119 41.2
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 7.1e-14 82.0 55 54.5
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 2.1e-13 80.5 119 38.7
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.3e-10 71.2 88 38.6
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 6.2e-10 68.9 184 28.8
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.1e-09 68.2 118 33.9
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 2.4e-09 67.0 50 56.0
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 3.1e-09 66.6 80 38.8
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.5e-08 64.3 156 29.5
PRCOL_00000148 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 3.4e-08 63.2 190 27.4
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 5.8e-08 62.4 133 32.3


User provided reference genes

Program Settings