Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013212 Solanum tuberosum HOM05D003226 ORTHO05D020384 1.6e-127 459.5 241 100.0
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 8.7e-38 161.4 196 52.0
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 7.4e-37 158.3 215 49.3
Nitab4.5_0026203g0010 Nicotiana tabacum HOM05D003226 ORTHO05D005723 3.7e-36 156.0 173 56.1
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 1.4e-35 154.1 377 34.7
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 1.7e-33 147.1 167 53.9
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 1.9e-32 143.7 156 57.1
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 3.2e-32 142.9 156 56.4
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 1.2e-31 141.0 156 55.8
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 2.2e-28 130.2 217 44.2
Hma1.2p1_0409F.1_g146951 Hydrangea macrophylla HOM05D003226 ORTHO05D005723 1.1e-27 127.9 224 40.6
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 1.8e-27 127.1 375 31.5
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 1.8e-27 127.1 145 52.4
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 3.1e-27 126.3 304 34.5
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 3.1e-27 126.3 329 33.1
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 4.1e-27 125.9 380 31.6
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 6.9e-27 125.2 142 52.1
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 1.2e-26 124.4 329 32.5
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 1.5e-26 124.0 380 32.1
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 2.6e-26 123.2 100 67.0
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 2.6e-26 123.2 324 33.3
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 2.6e-26 123.2 329 32.5
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 3.4e-26 122.9 327 32.4
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 4.5e-26 122.5 304 33.2
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 5.9e-26 122.1 142 52.1
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 7.7e-26 121.7 379 31.1
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 1.0e-25 121.3 215 39.5
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 1.7e-25 120.6 380 30.3
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 2.2e-25 120.2 400 29.8
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 2.9e-25 119.8 145 48.3
Oeu062107.2 Olea europaea HOM05D003226 ORTHO05D005723 3.8e-25 119.4 125 57.6
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 3.8e-25 119.4 145 48.3
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 5.0e-25 119.0 366 30.6
SalBow1G4412 Salvia bowleyana HOM05D003226 ORTHO05D005723 5.0e-25 119.0 210 40.5
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 8.5e-25 118.2 308 32.8
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.1e-24 117.9 329 31.9
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 1.4e-24 117.5 304 33.2
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 1.4e-24 117.5 304 33.2
vmacro02215 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 1.9e-24 117.1 136 52.2
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 2.5e-24 116.7 304 32.6
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 2.5e-24 116.7 100 62.0
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 2.5e-24 116.7 100 63.0
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 3.2e-24 116.3 304 32.2
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 4.2e-24 115.9 167 44.9
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 7.2e-24 115.2 161 46.0
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 9.4e-24 114.8 142 47.2
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.2e-23 114.4 142 48.6
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 1.6e-23 114.0 338 30.5
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 1.6e-23 114.0 307 30.9
Nitab4.5_0004308g0020 Nicotiana tabacum HOM05D003226 ORTHO05D005723 1.6e-23 114.0 153 46.4
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 2.1e-23 113.6 304 31.9
Dinv09231 Davidia involucrata HOM05D003226 ORTHO05D020384 2.1e-23 113.6 145 47.6
SHI25915 Sapria himalayana HOM05D003226 ORTHO05D005723 2.1e-23 113.6 100 63.0
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 3.6e-23 112.8 307 32.9
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 3.6e-23 112.8 304 32.6
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 3.6e-23 112.8 100 60.0
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 4.7e-23 112.5 177 42.9
Nn4g25634 Nelumbo nucifera HOM05D003226 ORTHO05D005723 4.7e-23 112.5 168 44.0
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 4.7e-23 112.5 175 43.4
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 7.9e-23 111.7 100 58.0
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 7.9e-23 111.7 304 31.9
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 7.9e-23 111.7 379 29.8
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 7.9e-23 111.7 337 31.2
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 1.0e-22 111.3 147 45.6
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 1.4e-22 110.9 134 48.5
Gohir.A09G016100 Gossypium hirsutum HOM05D003226 ORTHO05D005723 1.8e-22 110.5 100 61.0
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 1.8e-22 110.5 187 40.6
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 2.3e-22 110.2 145 46.9
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 2.3e-22 110.2 151 43.0
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 2.3e-22 110.2 103 59.2
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 3.0e-22 109.8 150 46.7
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 8.8e-22 108.2 329 30.7
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 1.5e-21 107.5 304 31.9
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 2.0e-21 107.1 327 30.9
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 3.3e-21 106.3 217 37.3
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 9.7e-21 104.8 366 29.5
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 1.3e-20 104.4 142 45.1
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 3.7e-20 102.8 232 35.3
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 8.2e-20 101.7 304 30.9
CiPaw.03G026500 Carya illinoinensis HOM05D003226 ORTHO05D020384 1.4e-19 100.9 179 40.8
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 3.1e-19 99.8 103 54.4
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 4.1e-19 99.4 293 31.1
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 5.3e-19 99.0 349 28.7
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 1.6e-18 97.4 76 61.8
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 1.6e-18 97.4 103 53.4
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 1.6e-18 97.4 142 38.7
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 4.5e-18 95.9 171 38.0
Aqoxy293s003 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.0e-17 94.7 142 45.8
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 1.0e-17 94.7 180 37.2
HPP92_015724 Vanilla planifolia HOM05D003226 ORTHO05D005723 1.3e-17 94.4 197 36.0
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 2.2e-17 93.6 141 42.6
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 2.9e-17 93.2 100 53.0
RcHm_v2.0_Chr7g0223681 Rosa chinensis HOM05D003226 ORTHO05D011648 2.9e-17 93.2 222 31.5
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 5.0e-17 92.4 398 26.4
GSVIVG01011403001 Vitis vinifera HOM05D003226 ORTHO05D005723 5.0e-17 92.4 119 44.5
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 1.9e-16 90.5 329 28.6
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 2.5e-16 90.1 142 41.5
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 3.2e-16 89.7 377 27.6
Dinv05916 Davidia involucrata HOM05D003226 ORTHO05D005723 4.2e-16 89.4 227 32.2
Dinv05919 Davidia involucrata HOM05D003226 ORTHO05D005723 5.5e-16 89.0 257 30.4
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 1.6e-15 87.4 212 34.0
SalBow1G6091 Salvia bowleyana HOM05D003226 ORTHO05D005723 2.1e-15 87.0 184 34.2
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 2.7e-15 86.7 150 37.3
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 6.1e-15 85.5 166 38.6
arahy.Tifrunner.gnm1.ann1.WKF5J8 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.8e-14 84.0 128 40.6
MBI16_g38291_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 3.0e-14 83.2 184 32.6
Dinv15322 Davidia involucrata HOM05D003226 ORTHO05D020384 5.2e-14 82.4 105 46.7
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 6.7e-14 82.0 163 38.7
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 6.7e-14 82.0 100 49.0
Medtr7g091430 Medicago truncatula HOM05D003226 ORTHO05D005723 2.0e-13 80.5 155 35.5
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 5.7e-13 79.0 279 28.0
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 7.5e-13 78.6 54 70.4
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 1.3e-12 77.8 48 83.3
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.7e-12 77.4 48 83.3
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 1.7e-12 77.4 48 81.2
RcHm_v2.0_Chr7g0226461 Rosa chinensis HOM05D003226 ORTHO05D005723 2.2e-12 77.0 244 31.1
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 2.8e-12 76.6 48 81.2
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 2.8e-12 76.6 42 90.5
Glyma.09G098100 Glycine max HOM05D003226 ORTHO05D011023 3.7e-12 76.3 60 71.7
Mapoly0189s0011 Marchantia polymorpha HOM05D003226 ORTHO05D005723 4.8e-12 75.9 48 81.2
Medtr7g091420 Medicago truncatula HOM05D003226 ORTHO05D005723 6.3e-12 75.5 125 40.8
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 2.4e-11 73.6 125 40.8
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 2.4e-11 73.6 125 40.8
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 2.4e-11 73.6 125 40.8
PRCOL_00002234 Prasinoderma coloniale HOM05D003226 ORTHO05D005723 2.4e-11 73.6 48 79.2
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 4.1e-11 72.8 147 34.7
MCO09G434 Micromonas commoda HOM05D003226 ORTHO05D005723 7.0e-11 72.0 48 77.1
AagrBONN_evm.TU.Sc2ySwM_368.939 Anthoceros agrestis HOM05D003226 ORTHO05D005723 1.2e-10 71.2 48 77.1
Dinv02782 Davidia involucrata HOM05D003226 ORTHO05D011023 1.2e-10 71.2 42 85.7
Pp3c18_16050 Physcomitrium patens HOM05D003226 ORTHO05D005723 1.2e-10 71.2 48 75.0
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 1.6e-10 70.9 103 43.7
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 1.6e-10 70.9 103 43.7
DCAR_025375 Daucus carota HOM05D003226 ORTHO05D005723 1.0e-09 68.2 155 32.9
FAN27G0753 Fragaria x ananassa HOM05D003226 ORTHO05D011023 1.7e-09 67.4 37 89.2
RcHm_v2.0_Chr5g0008461 Rosa chinensis HOM05D003226 ORTHO05D035631 2.2e-09 67.0 46 76.1
Sed0006229 Sechium edule HOM05D003226 ORTHO05D005723 3.8e-09 66.2 130 37.7
FvH4_4g18080 Fragaria vesca HOM05D003226 ORTHO05D005723 6.5e-09 65.5 47 76.6
Cre12.g493400 Chlamydomonas reinhardtii HOM05D003226 ORTHO05D005723 1.1e-08 64.7 205 32.7
Manes.18G107600 Manihot esculenta HOM05D003226 ORTHO05D020384 1.5e-08 64.3 100 43.0
PGR044G0718 Punica granatum HOM05D003226 ORTHO05D011023 5.5e-08 62.4 48 64.6
Zm00001eb281440 Zea mays HOM05D003226 ORTHO05D005723 7.2e-08 62.0 86 39.5
Glyma.03G087801 Glycine max HOM05D003226 ORTHO05D020384 9.4e-08 61.6 60 55.0
Zm00001eb212290 Zea mays HOM05D003226 ORTHO05D005723 1.2e-07 61.2 78 41.0
MBI01_g32851_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011023 5.2e-06 55.8 38 76.3
QL11p027129 Quercus lobata HOM05D003226 ORTHO05D005723 5.2e-06 55.8 301 25.6


User provided reference genes

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