Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 0.0e+00 1341.6 940 100.0
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.3e-310 1067.0 952 85.7
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.2e-305 1053.1 952 84.8
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.5e-303 1046.2 953 84.1
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.5e-303 1046.2 952 84.6
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.4e-293 1012.3 951 81.6
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.8e-287 991.1 948 82.3
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.3e-274 948.7 956 79.4
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 9.6e-274 947.2 961 79.7
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 3.9e-267 925.2 955 76.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 4.5e-263 911.8 970 72.5
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.8e-259 899.8 953 75.8
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 3.0e-259 899.0 954 65.0
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 2.0e-255 886.3 994 60.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 9.3e-253 877.5 933 74.6
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 9.3e-253 877.5 934 75.4
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.5e-252 875.5 937 75.7
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.6e-250 867.5 933 75.3
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.1e-248 864.0 955 74.2
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 4.5e-247 858.6 952 73.6
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 5.9e-247 858.2 1019 67.2
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 5.9e-247 858.2 933 75.0
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 6.5e-246 854.7 938 73.2
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.2e-245 852.0 943 73.4
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.2e-244 850.5 944 73.6
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 4.6e-244 848.6 939 72.2
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 6.1e-244 848.2 949 72.6
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 1.8e-243 846.7 953 73.0
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.8e-243 846.7 948 73.3
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.8e-243 846.7 937 73.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 3.9e-243 845.5 937 73.0
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 5.1e-243 845.1 952 73.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 5.1e-243 845.1 937 72.8
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.5e-242 843.6 953 72.1
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 4.3e-242 842.0 976 59.5
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 7.4e-242 841.3 940 70.1
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 6.3e-241 838.2 953 71.4
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 8.2e-241 837.8 929 71.5
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 2.4e-240 836.3 930 73.3
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 1.3e-238 830.5 956 71.2
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 3.8e-238 828.9 936 61.5
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.4e-237 827.0 937 71.4
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 5.5e-237 825.1 935 71.0
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 1.8e-235 820.1 936 72.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 4.4e-234 815.5 936 69.6
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 3.7e-233 812.4 928 63.0
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 4.8e-233 812.0 950 71.8
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 8.2e-233 811.2 935 70.3
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 5.3e-232 808.5 961 70.8
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 9.1e-232 807.7 935 70.3
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 9.1e-232 807.7 936 71.6
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 2.2e-230 803.1 940 70.9
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 3.8e-230 802.4 928 64.1
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 3.8e-230 802.4 936 70.8
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 5.0e-230 802.0 957 68.9
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 1.9e-229 800.0 935 69.9
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 4.2e-229 798.9 933 68.3
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 9.4e-229 797.7 943 70.5
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 7.9e-228 794.7 937 67.2
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.0e-227 794.3 936 70.4
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 2.3e-227 793.1 951 69.1
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 2.3e-227 793.1 941 71.4
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 2.6e-226 789.6 983 68.3
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.7e-225 786.9 936 70.5
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 3.1e-224 782.7 951 69.0
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 4.1e-224 782.3 938 69.6
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 5.3e-224 781.9 1129 62.2
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.3e-222 777.3 737 72.6
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.2e-222 776.5 965 64.1
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.9e-221 773.5 960 66.9
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.9e-221 773.5 959 67.9
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 4.2e-221 772.3 956 67.7
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 7.2e-221 771.5 959 68.2
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 9.4e-221 771.2 946 66.9
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 2.3e-219 766.5 951 67.0
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.0e-219 766.1 954 68.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 4.0e-219 765.8 950 66.5
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 5.2e-219 765.4 955 68.8
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 6.7e-219 765.0 955 68.7
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 6.7e-219 765.0 955 68.8
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.2e-218 764.2 955 68.6
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-218 764.2 959 67.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 3.3e-218 762.7 937 69.1
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 7.5e-218 761.5 933 69.3
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.2e-217 760.0 959 67.4
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 2.8e-217 759.6 949 68.5
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.3e-217 758.4 959 67.4
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 2.4e-216 756.5 965 65.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.3e-214 750.7 963 63.8
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 5.0e-214 748.8 943 59.0
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.1e-213 747.7 810 77.3
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.7e-212 743.0 937 69.1
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 4.4e-210 735.7 952 66.4
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 7.5e-210 734.9 934 67.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.8e-209 733.0 957 46.8
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.2e-206 723.4 885 69.6
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 7.8e-199 698.4 935 66.0
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.0e-194 683.7 918 62.6
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.0e-187 661.4 842 69.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 2.9e-185 653.3 936 60.9
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.1e-179 633.3 924 62.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-173 614.4 916 59.8
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 7.6e-170 602.1 933 53.1
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.6e-162 577.0 854 62.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.4e-160 570.5 910 57.6
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.8e-155 554.3 693 60.8
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 3.8e-153 546.6 925 56.4
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-147 528.1 947 53.4
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-147 528.1 947 53.4
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 3.2e-144 516.9 969 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.2e-143 515.0 935 55.1
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 9.4e-112 409.1 645 41.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.5e-96 357.8 598 55.0
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 5.5e-96 356.7 296 64.5
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.1e-95 353.2 956 45.9
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 2.4e-91 341.3 950 40.3
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 7.0e-91 339.7 589 39.6
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 1.3e-68 265.8 723 42.2
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.4e-43 182.6 129 67.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.6e-42 179.1 135 63.0
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.6e-42 179.1 188 55.3
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.6e-40 169.9 182 50.5
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.6e-39 169.1 126 62.7
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 3.0e-25 121.7 138 47.1
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.8e-22 112.5 125 43.2
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 4.0e-22 111.3 78 71.8
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 9.0e-22 110.2 70 85.7
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 3.4e-21 108.2 78 71.8
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.4e-21 108.2 76 65.8
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 9.3e-19 100.1 115 42.6
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.6e-18 99.4 80 62.5
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.6e-18 99.4 113 43.4
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.7e-17 93.6 82 56.1
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.3e-16 91.3 202 36.6
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 4.8e-15 87.8 55 78.2
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.4e-14 85.5 114 54.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.2e-10 73.2 54 66.7
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.7e-10 72.0 102 39.2
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 2.3e-09 68.9 83 48.2
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 6.7e-09 67.4 173 28.3
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 6.7e-09 67.4 173 28.9
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.5e-08 66.2 173 28.3
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 3.3e-08 65.1 173 27.7
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 7.4e-08 63.9 184 28.3
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 2.8e-07 62.0 177 29.4
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 6.3e-07 60.8 173 26.6
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 6.3e-07 60.8 173 27.2
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 8.2e-07 60.5 173 26.0
Nitab4.5_0000073g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 8.2e-07 60.5 180 25.0
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.4e-06 59.7 55 58.2
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 1.4e-06 59.7 182 28.6
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 1.4e-06 59.7 179 26.8
Lj1A939T58 Lonicera japonica HOM05D000526 ORTHO05D002053 1.8e-06 59.3 123 29.3
Nitab4.5_0002642g0040 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.8e-06 59.3 180 25.0
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 1.8e-06 59.3 185 27.0
PGSC0003DMG400000330 Solanum tuberosum HOM05D005151 ORTHO05D006322 1.8e-06 59.3 173 25.4
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.4e-06 58.9 116 29.3
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 3.1e-06 58.5 136 25.7
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 3.1e-06 58.5 178 27.0
Phvul.002G153000 Phaseolus vulgaris HOM05D000526 ORTHO05D002053 3.1e-06 58.5 142 29.6
Sopen12g003960 Solanum pennellii HOM05D005151 ORTHO05D006322 3.1e-06 58.5 173 25.4
TAR623G0465 Trochodendron aralioides HOM05D000526 ORTHO05D002053 3.1e-06 58.5 127 29.9
HPP92_015469 Vanilla planifolia HOM05D000526 ORTHO05D000956 4.1e-06 58.2 152 28.3
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 5.3e-06 57.8 184 24.5
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 5.3e-06 57.8 173 25.4
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 5.3e-06 57.8 173 25.4
TAR369G0222 Trochodendron aralioides HOM05D000526 ORTHO05D002053 5.3e-06 57.8 123 30.1
Migut.F01455 Erythranthe guttata HOM05D000526 ORTHO05D002053 6.9e-06 57.4 130 29.2
Glyma.11G027500 Glycine max HOM05D000526 ORTHO05D002053 6.9e-06 57.4 140 27.1
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 9.1e-06 57.0 160 24.4
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 9.1e-06 57.0 189 27.0


User provided reference genes

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