Gene: Sopen12g003960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g003960
  • Transcript Identifier Sopen12g003960.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 2594855-2598140 : positive

Gene Family Information

  • ID HOM05D005151
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g003960.1

Descriptions

  • Description The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin. | vernalization independence 3 (VIP3) | FUNCTIONS IN: protein binding, nucleotide binding | INVOLVED IN: histone H3-K4 methylation, histone H3-K36 methylation, negative regulation of flower development | LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1904278
ISO
PLAZA Integrative Orthologypositive regulation of wax biosynthetic process AT4G29830
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT4G29830
GO:0010452
ISO
PLAZA Integrative Orthologyhistone H3-K36 methylation AT4G29830
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT4G29830
GO:0051568
ISO
PLAZA Integrative Orthologyhistone H3-K4 methylation AT4G29830

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G29830
GO:0016593
ISO
PLAZA Integrative OrthologyCdc73/Paf1 complex AT4G29830
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G29830
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT4G29830

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024977 Anaphase-promoting complex subunit 4, WD40 domain
IPR001680 WD40 repeat
IPR020472 G-protein beta WD-40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
15.3.5.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP3/SKI8
16.4.1.2.6.3 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI8/VIP3