Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.2e-114 415.6 206 100.0
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 3.9e-95 351.7 238 77.7
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 5.6e-94 347.8 238 77.7
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.2e-91 340.1 181 93.4
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.5e-91 339.7 181 92.8
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 4.9e-90 334.7 181 91.2
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.1e-89 333.6 182 90.7
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 1.4e-89 333.2 181 91.2
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 1.6e-88 329.7 181 90.6
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 8.7e-87 323.9 181 89.5
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 2.5e-86 322.4 181 87.8
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 5.6e-86 321.2 181 88.4
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 5.6e-86 321.2 181 88.4
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 7.4e-86 320.9 181 89.0
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 1.3e-85 320.1 181 85.6
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.8e-84 316.2 181 85.1
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 3.1e-84 315.5 181 85.1
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 3.1e-84 315.5 181 85.6
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 5.3e-84 314.7 181 84.0
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 1.5e-83 313.2 181 84.0
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 5.8e-83 311.2 181 85.1
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 1.7e-82 309.7 181 83.4
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 2.2e-82 309.3 181 82.3
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 2.9e-82 308.9 181 82.9
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 2.9e-82 308.9 181 84.5
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 2.9e-82 308.9 181 82.9
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 2.9e-82 308.9 181 84.5
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 3.8e-82 308.5 181 82.9
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 6.5e-82 307.8 181 81.8
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 6.5e-82 307.8 181 82.3
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 6.5e-82 307.8 181 82.9
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 8.4e-82 307.4 181 85.1
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 8.4e-82 307.4 181 82.9
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 1.1e-81 307.0 181 82.3
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 1.1e-81 307.0 181 82.9
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 1.4e-81 306.6 181 83.4
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.9e-81 306.2 181 81.8
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 1.9e-81 306.2 181 81.8
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 1.9e-81 306.2 181 82.3
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 2.5e-81 305.8 181 81.8
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 2.5e-81 305.8 181 82.3
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 2.5e-81 305.8 181 81.8
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 3.2e-81 305.4 181 81.8
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 4.2e-81 305.1 181 82.3
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 4.2e-81 305.1 181 81.8
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 4.2e-81 305.1 181 81.8
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 5.5e-81 304.7 181 81.2
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 5.5e-81 304.7 167 90.4
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 5.5e-81 304.7 181 81.2
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 7.1e-81 304.3 172 86.6
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 7.1e-81 304.3 181 81.8
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 7.1e-81 304.3 181 79.6
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 7.1e-81 304.3 181 81.8
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 9.3e-81 303.9 181 82.3
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.2e-80 303.5 181 81.8
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 1.6e-80 303.1 181 80.7
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 2.1e-80 302.8 181 82.3
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 2.1e-80 302.8 181 80.1
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 2.7e-80 302.4 181 81.2
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 3.5e-80 302.0 181 80.7
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 3.5e-80 302.0 181 80.7
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 3.5e-80 302.0 181 82.3
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 6.0e-80 301.2 181 81.2
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 6.0e-80 301.2 181 81.2
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 6.0e-80 301.2 181 80.7
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 6.0e-80 301.2 181 80.1
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 6.0e-80 301.2 181 81.8
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 7.9e-80 300.8 238 64.3
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 81.8
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 82.3
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 81.8
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 79.6
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 80.7
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.3e-79 300.1 181 81.8
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.8e-79 299.7 181 81.8
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 1.8e-79 299.7 181 81.2
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 1.8e-79 299.7 181 81.8
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.8e-79 299.7 181 80.1
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 2.3e-79 299.3 189 76.7
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.3e-79 299.3 181 80.1
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-79 299.3 181 80.7
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-79 299.3 181 80.7
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-79 299.3 181 80.7
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 3.0e-79 298.9 181 81.8
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 3.0e-79 298.9 181 80.7
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 3.0e-79 298.9 181 81.2
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 3.9e-79 298.5 181 81.2
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 3.9e-79 298.5 181 80.7
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 3.9e-79 298.5 181 80.7
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 3.9e-79 298.5 181 80.7
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 3.9e-79 298.5 181 80.7
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 5.1e-79 298.1 181 80.1
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 5.1e-79 298.1 181 79.6
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 5.1e-79 298.1 181 80.1
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 5.1e-79 298.1 181 79.6
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 6.7e-79 297.7 181 81.8
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 6.7e-79 297.7 181 80.7
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 6.7e-79 297.7 181 80.1
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 6.7e-79 297.7 181 80.7
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 1.1e-78 297.0 181 81.2
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 1.5e-78 296.6 181 79.6
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 1.5e-78 296.6 181 79.6
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 1.9e-78 296.2 181 79.0
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 1.9e-78 296.2 181 80.1
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.9e-78 296.2 181 79.0
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 2.5e-78 295.8 181 79.6
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 2.5e-78 295.8 181 80.1
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 3.3e-78 295.4 181 79.0
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 3.3e-78 295.4 181 80.1
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 3.3e-78 295.4 194 76.3
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 4.3e-78 295.0 181 80.1
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 5.7e-78 294.7 181 79.6
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 7.4e-78 294.3 181 79.6
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 9.7e-78 293.9 181 79.0
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 1.6e-77 293.1 181 80.1
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 1.6e-77 293.1 181 80.1
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 2.8e-77 292.4 181 79.0
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 8.2e-77 290.8 181 79.0
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 8.2e-77 290.8 181 78.5
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.8e-76 289.7 181 76.8
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.4e-76 289.3 196 74.5
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.3e-74 283.5 181 76.2
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 2.2e-74 282.7 213 68.5
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 3.8e-74 282.0 220 66.4
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 6.5e-74 281.2 181 76.2
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 2.5e-73 279.3 181 74.6
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 7.2e-73 277.7 181 74.0
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 1.1e-70 270.4 181 73.5
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.9e-70 269.6 166 78.9
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 7.4e-70 267.7 181 71.3
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 6.3e-69 264.6 251 59.4
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.4e-68 262.7 152 82.2
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 4.1e-68 261.9 181 73.5
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 5.9e-67 258.1 167 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 1.0e-66 257.3 181 72.4
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 1.0e-66 257.3 182 70.9
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.4e-65 253.4 181 70.7
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.9e-65 253.1 181 70.2
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.1e-64 249.6 181 71.8
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.9e-63 245.4 182 67.0
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 1.3e-61 240.4 191 62.8
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.7e-61 240.0 171 72.5
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 5.0e-58 228.4 137 82.5
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 1.1e-57 227.3 167 70.7
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 1.2e-56 223.8 181 65.7
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 4.4e-54 215.3 160 68.1
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 5.0e-50 201.8 125 76.8
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 2.0e-46 189.9 181 58.0
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 7.5e-46 188.0 117 78.6
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.0e-38 163.3 138 63.8
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 1.8e-36 156.8 179 47.5
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 4.1e-36 155.6 92 81.5
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 5.4e-36 155.2 92 81.5
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 2.0e-35 153.3 92 78.3
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 2.3e-34 149.8 105 69.5
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.6e-32 143.7 92 75.0
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 4.7e-32 142.1 81 81.5
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 2.0e-30 136.7 180 44.4
Nitab4.5_0000561g0090 Nicotiana tabacum HOM05D003508 ORTHO05D017053 5.7e-30 135.2 113 62.8
HanXRQChr15g0478241 Helianthus annuus HOM05D003508 ORTHO05D004579 1.2e-27 127.5 92 67.4
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 2.0e-22 110.2 61 82.0
Gohir.D10G141300 Gossypium hirsutum HOM05D003508 ORTHO05D017053 4.4e-22 109.0 70 72.9
Gorai.003G053700 Gossypium raimondii HOM05D003508 ORTHO05D017053 5.8e-22 108.6 63 77.8
Gorai.008G061300 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.3e-21 107.5 88 62.5
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 2.9e-21 106.3 63 76.2
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.7e-21 105.9 63 76.2
Gohir.D07G221800 Gossypium hirsutum HOM05D003508 ORTHO05D017053 1.1e-20 104.4 73 68.5
Gorai.001G156500 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.1e-20 104.4 73 68.5
QL04p041875 Quercus lobata HOM05D003508 ORTHO05D004579 1.4e-20 104.0 63 74.6
Gohir.D11G205701 Gossypium hirsutum HOM05D003508 ORTHO05D017053 4.6e-19 99.0 61 75.4
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.1e-15 87.8 70 68.6
Nn5g30614 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.6e-14 83.2 65 60.0
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 3.7e-13 79.3 43 86.0
Gorai.009G349300 Gossypium raimondii HOM05D003508 ORTHO05D010805 4.9e-13 79.0 97 49.5
Gohir.D05G325100 Gossypium hirsutum HOM05D003508 ORTHO05D010805 1.9e-12 77.0 43 81.4
Gohir.D10G176800 Gossypium hirsutum HOM05D003508 ORTHO05D010805 5.4e-12 75.5 43 79.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 6.0e-11 72.0 43 74.4
HanXRQChr02g0038371 Helianthus annuus HOM05D003508 ORTHO05D004579 6.6e-10 68.6 42 69.0
CsaV3_7G016190 Cucumis sativus L. HOM05D003508 ORTHO05D004579 4.3e-09 65.9 75 48.0
Gohir.D01G171250 Gossypium hirsutum HOM05D003508 ORTHO05D017053 4.3e-09 65.9 37 81.1
Prupe.2G078500 Prunus persica HOM05D003508 ORTHO05D335769 2.8e-08 63.2 43 65.1
Gohir.D10G063000 Gossypium hirsutum HOM05D003508 ORTHO05D017053 8.1e-08 61.6 37 73.0


User provided reference genes

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