Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.1e-166 589.0 299 100.0
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 3.6e-142 508.4 299 88.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 7.5e-140 500.7 313 84.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.7e-139 499.6 313 85.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-138 496.9 313 84.7
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.6e-136 487.3 313 82.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.1e-133 480.3 313 82.4
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.3e-128 463.4 313 81.2
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.1e-126 456.1 310 78.1
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.3e-119 432.2 312 72.1
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.2e-116 423.7 315 72.4
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.6e-116 422.5 317 70.0
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.4e-116 422.2 317 70.3
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 3.8e-115 418.7 313 70.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 4.9e-115 418.3 317 69.4
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.4e-114 416.0 309 71.2
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 4.2e-114 415.2 309 69.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 9.3e-114 414.1 305 71.1
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.2e-113 413.7 312 70.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 2.1e-113 412.9 310 71.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 7.9e-113 411.0 309 70.2
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.3e-112 410.2 312 68.9
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.8e-112 409.8 312 70.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 3.0e-112 409.1 317 67.8
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.9e-112 408.7 314 69.1
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 5.1e-112 408.3 310 68.1
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 6.7e-112 407.9 310 70.3
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 8.7e-112 407.5 311 68.5
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.5e-111 406.8 312 70.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.9e-111 406.4 311 68.8
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-111 406.4 310 69.0
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.9e-111 406.4 310 69.0
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.5e-111 406.0 308 69.5
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 5.6e-111 404.8 317 68.1
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.4e-111 404.4 315 68.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.6e-111 404.1 309 70.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 9.6e-111 404.1 309 70.2
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.8e-110 402.5 310 68.7
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.2e-110 401.4 310 69.0
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 8.1e-110 401.0 305 69.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.1e-109 400.6 310 69.0
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-109 399.8 309 68.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.8e-109 399.8 314 67.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.4e-109 399.4 303 69.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.1e-109 399.1 312 67.9
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.1e-109 399.1 304 68.8
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 3.1e-109 399.1 304 67.8
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.1e-109 399.1 310 66.8
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 5.3e-109 398.3 315 65.7
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.3e-109 398.3 315 65.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 6.9e-109 397.9 310 66.8
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.4e-108 395.6 321 64.8
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.4e-108 395.6 311 68.5
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 4.5e-108 395.2 309 68.0
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 5.8e-108 394.8 308 67.5
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 5.8e-108 394.8 308 67.5
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 9.9e-108 394.0 312 64.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.3e-107 393.7 310 65.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.2e-107 392.9 304 67.1
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 2.9e-107 392.5 315 66.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.4e-107 391.0 312 64.7
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.1e-106 390.6 310 67.1
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.2e-106 388.7 308 67.9
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 4.2e-106 388.7 350 61.7
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.2e-106 388.7 316 65.5
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 5.5e-106 388.3 313 65.5
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.6e-105 386.7 313 66.1
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.6e-105 386.7 309 66.3
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.6e-105 386.7 318 63.5
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.6e-105 386.7 314 65.3
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.6e-105 386.7 300 67.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.6e-105 386.7 316 64.6
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.1e-105 386.3 311 65.3
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 6.0e-105 384.8 318 65.4
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 7.9e-105 384.4 300 68.0
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 7.9e-105 384.4 300 68.0
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 7.9e-105 384.4 300 68.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.3e-104 383.6 316 63.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.8e-104 383.3 313 64.5
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.3e-104 382.9 307 66.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.0e-104 382.5 346 59.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 6.7e-104 381.3 300 67.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 6.7e-104 381.3 300 67.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.9e-103 379.8 311 65.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.9e-103 379.8 311 66.2
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.5e-103 379.4 303 67.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.6e-103 378.3 317 62.8
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 9.6e-103 377.5 302 67.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.3e-102 377.1 314 63.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 2.1e-102 376.3 310 66.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.1e-102 376.3 309 65.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.8e-101 373.2 313 63.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.0e-100 369.8 251 76.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.6e-100 369.4 315 63.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 4.2e-98 362.1 306 63.4
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 7.1e-98 361.3 290 67.2
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.2e-97 360.5 335 60.6
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 7.9e-97 357.8 264 70.8
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 7.4e-95 351.3 329 57.4
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.6e-94 350.1 224 78.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.4e-93 347.1 248 72.2
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.4e-92 342.4 280 66.1
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 5.9e-92 341.7 343 54.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 6.5e-91 338.2 245 73.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.6e-89 332.0 204 81.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.8e-88 330.1 246 68.3
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.7e-86 323.6 301 55.5
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 3.1e-85 319.3 212 76.4
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.3e-85 318.5 243 70.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.7e-84 314.7 311 58.2
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-83 313.9 318 52.8
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.0e-80 302.8 267 59.6
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.0e-80 302.8 253 70.8
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 8.8e-80 301.2 299 56.2
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-79 300.8 229 66.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.4e-79 298.1 299 60.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 9.7e-79 297.7 302 54.0
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.4e-77 293.1 302 53.0
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 5.3e-77 292.0 186 78.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 4.4e-71 272.3 193 78.8
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 4.5e-68 262.3 375 45.1
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.5e-67 258.5 192 78.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.8e-62 242.3 264 57.6
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.5e-60 236.1 256 54.7
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.5e-58 230.7 295 47.8
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 8.9e-48 194.9 224 47.3
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 5.7e-47 192.2 117 82.9
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.9e-42 177.2 194 54.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.1e-40 169.9 242 42.6
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.8e-36 155.2 95 81.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.3e-34 149.4 122 67.2
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.6e-34 149.1 123 64.2
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 9.5e-34 148.3 193 47.7
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.2e-33 147.9 96 81.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.2e-33 145.6 204 48.5
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.0e-32 142.9 93 80.6
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 8.9e-32 141.7 200 40.5
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.4e-30 135.6 127 57.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.4e-30 135.6 127 57.5
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.0e-27 126.7 193 43.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 4.3e-26 122.9 241 38.2
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.7e-22 109.8 99 62.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.0e-19 101.7 140 45.7
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.6e-15 85.5 94 56.4
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.2e-13 80.1 64 70.3
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.6e-07 60.5 41 63.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 9.9e-07 58.5 62 54.8
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.7e-06 57.8 36 66.7
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.9e-06 57.0 57 59.6


User provided reference genes

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