Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 4.7e-55 217.6 110 100.0
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 2.2e-52 208.8 109 94.5
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 4.9e-52 207.6 109 93.6
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 1.5e-48 196.1 109 89.0
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 1.5e-48 196.1 109 89.0
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 3.3e-48 194.9 109 88.1
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.6e-47 192.6 109 86.2
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.2e-45 186.4 109 82.6
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 9.8e-45 183.3 158 64.6
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.2e-39 166.4 109 73.4
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.1e-39 165.6 109 70.6
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 4.7e-39 164.5 109 68.8
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 4.7e-39 164.5 109 72.5
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 8.0e-39 163.7 109 72.5
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.8e-38 162.5 109 68.8
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 1.8e-38 162.5 109 70.6
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 1.8e-38 162.5 109 69.7
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 2.3e-38 162.2 109 69.7
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 3.1e-38 161.8 109 70.6
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 3.1e-38 161.8 109 70.6
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 5.2e-38 161.0 109 67.9
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 5.2e-38 161.0 109 67.9
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.2e-37 159.8 109 67.9
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 1.2e-37 159.8 109 69.7
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.2e-37 159.8 109 69.7
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 1.2e-37 159.8 108 68.5
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 1.2e-37 159.8 109 65.1
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.2e-37 159.8 109 70.6
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 1.5e-37 159.5 109 67.9
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 2.0e-37 159.1 109 67.9
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 2.0e-37 159.1 109 71.6
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 2.0e-37 159.1 109 68.8
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 2.0e-37 159.1 109 67.9
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.6e-37 158.7 109 66.1
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.6e-37 158.7 109 66.1
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 2.6e-37 158.7 109 66.1
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 3.4e-37 158.3 109 68.8
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 3.4e-37 158.3 109 67.9
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.4e-37 158.3 108 71.3
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 4.4e-37 157.9 109 67.0
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 4.4e-37 157.9 108 69.4
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 4.4e-37 157.9 109 67.9
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 4.4e-37 157.9 109 70.6
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 4.4e-37 157.9 109 68.8
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 5.8e-37 157.5 109 69.7
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 7.5e-37 157.1 109 68.8
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 9.8e-37 156.8 109 66.1
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 9.8e-37 156.8 108 70.4
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 9.8e-37 156.8 109 68.8
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 9.8e-37 156.8 109 68.8
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.3e-36 156.4 109 67.0
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.3e-36 156.4 109 67.0
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 1.7e-36 156.0 109 68.8
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 1.7e-36 156.0 109 66.1
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-36 156.0 109 65.1
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-36 156.0 109 65.1
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 3.7e-36 154.8 109 68.8
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 6.4e-36 154.1 109 65.1
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 8.3e-36 153.7 109 64.2
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 8.3e-36 153.7 109 66.1
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 8.3e-36 153.7 109 67.9
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.1e-35 153.3 108 65.7
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.9e-35 152.5 109 67.0
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 4.1e-35 151.4 109 63.3
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 4.1e-35 151.4 109 66.1
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 9.2e-35 150.2 109 64.2
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 9.2e-35 150.2 109 60.6
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 1.2e-34 149.8 109 64.2
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 1.2e-34 149.8 109 66.1
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 1.6e-34 149.4 108 63.0
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 1.6e-34 149.4 108 68.5
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 2.1e-34 149.1 109 66.1
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 2.1e-34 149.1 109 60.6
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 2.7e-34 148.7 109 65.1
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 4.6e-34 147.9 108 63.0
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 4.6e-34 147.9 109 65.1
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 4.6e-34 147.9 109 65.1
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 7.8e-34 147.1 109 64.2
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 7.8e-34 147.1 109 66.1
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-33 146.0 109 66.1
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 1.7e-33 146.0 108 61.1
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 3.0e-33 145.2 108 61.1
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 3.9e-33 144.8 107 62.6
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 3.9e-33 144.8 107 62.6
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 3.9e-33 144.8 108 64.8
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 5.0e-33 144.4 109 65.1
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 8.6e-33 143.7 109 61.5
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 8.6e-33 143.7 107 61.7
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 8.6e-33 143.7 107 61.7
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 8.6e-33 143.7 109 60.6
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.1e-32 143.3 109 61.5
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 1.5e-32 142.9 109 64.2
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.9e-32 142.5 109 60.6
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 1.9e-32 142.5 109 64.2
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.5e-32 142.1 108 62.0
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 3.3e-32 141.7 109 60.6
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 3.3e-32 141.7 108 57.4
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 5.6e-32 141.0 109 61.5
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 7.3e-32 140.6 108 59.3
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 9.5e-32 140.2 109 60.6
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 1.2e-31 139.8 109 62.4
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 1.6e-31 139.4 109 60.6
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 2.1e-31 139.0 109 60.6
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 2.8e-31 138.7 108 57.4
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 2.8e-31 138.7 108 57.4
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 2.8e-31 138.7 108 57.4
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.8e-31 138.7 109 57.8
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 3.6e-31 138.3 109 61.5
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 4.7e-31 137.9 109 58.7
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 1.4e-30 136.3 109 57.8
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 2.3e-30 135.6 105 61.0
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 3.1e-30 135.2 113 54.9
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 3.1e-30 135.2 107 59.8
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 1.2e-29 133.3 109 56.0
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 4.4e-29 131.3 109 59.6
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 4.4e-29 131.3 110 54.5
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 1.7e-28 129.4 109 59.6
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 2.9e-28 128.6 97 62.9
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 8.3e-28 127.1 109 56.9
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 1.1e-27 126.7 110 57.3
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 4.6e-26 121.3 109 56.0
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 6.0e-26 120.9 109 56.0
RcHm_v2.0_Chr7g0215511 Rosa chinensis HOM05D003562 ORTHO05D004074 2.3e-25 119.0 81 70.4
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 5.1e-25 117.9 106 56.6
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 1.1e-24 116.7 106 57.5
Solyc12g036263.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.2e-23 113.2 117 54.7
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 3.6e-23 111.7 109 50.5
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 4.7e-23 111.3 108 50.9
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 3.1e-22 108.6 106 50.9
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 4.0e-22 108.2 110 50.0
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 1.5e-21 106.3 109 46.8
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 1.5e-21 106.3 109 50.5
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 5.8e-21 104.4 97 53.6
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 9.9e-21 103.6 67 73.1
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 3.2e-19 98.6 111 45.9
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 7.1e-19 97.4 111 45.0
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 7.1e-19 97.4 108 47.2
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 9.2e-19 97.1 109 48.6
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.5e-18 95.1 106 45.3
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 4.3e-16 88.2 110 47.3
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 4.3e-16 88.2 111 41.4
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 4.3e-16 88.2 108 44.4
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 1.2e-15 86.7 108 41.7
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 6.2e-15 84.3 108 38.9
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 3.1e-14 82.0 111 36.9
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 9.9e-13 77.0 108 42.6
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 1.7e-12 76.3 109 39.4
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.7e-12 76.3 108 37.0
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 3.8e-12 75.1 114 34.2
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 6.4e-12 74.3 110 37.3
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 6.4e-12 74.3 108 37.0
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 8.4e-12 73.9 108 38.0
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 1.9e-11 72.8 71 49.3
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.2e-11 72.0 110 33.6
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.2e-11 72.0 107 34.6
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.2e-11 72.0 108 36.1
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 5.4e-11 71.2 72 48.6
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 5.4e-11 71.2 107 37.4
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 7.1e-11 70.9 111 34.2
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 9.3e-11 70.5 108 35.2
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 1.2e-10 70.1 108 36.1
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 1.2e-10 70.1 73 54.8
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.6e-10 68.2 101 34.7
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 7.8e-10 67.4 108 34.3
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 7.8e-10 67.4 108 34.3
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.8e-10 67.4 108 34.3
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 1.0e-09 67.0 108 33.3
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.3e-09 66.6 108 33.3
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 1.3e-09 66.6 108 33.3
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 1.7e-09 66.2 63 49.2
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 3.9e-09 65.1 111 30.6
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 5.1e-09 64.7 67 44.8
CAN.G341.6 Capsicum annuum HOM05D003562 ORTHO05D002248 6.6e-09 64.3 92 34.8
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 1.9e-08 62.8 71 39.4
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 4.3e-08 61.6 73 37.0
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 9.6e-08 60.5 67 43.3
Dinv33286 Davidia involucrata HOM05D003562 ORTHO05D004074 8.1e-07 57.4 52 55.8
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 3.1e-06 55.5 101 35.6
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 3.1e-06 55.5 100 33.0
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 3.1e-06 55.5 100 33.0
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 9.0e-06 53.9 63 42.9


User provided reference genes

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