Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 1.3e-48 196.1 97 100.0
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 7.1e-31 137.1 77 88.3
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 2.3e-29 132.1 67 97.0
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 2.3e-29 132.1 67 97.0
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.5e-28 129.4 81 79.0
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.5e-28 129.4 77 83.1
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 8.4e-24 113.6 78 70.5
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 3.2e-23 111.7 66 80.3
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 3.5e-22 108.2 71 73.2
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 3.9e-21 104.8 70 70.0
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 5.1e-21 104.4 71 69.0
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.9e-20 102.4 69 71.0
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.5e-20 102.1 69 71.0
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 2.5e-20 102.1 64 73.4
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 2.5e-20 102.1 64 73.4
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.5e-20 102.1 66 72.7
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 3.3e-20 101.7 64 71.9
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 5.6e-20 100.9 64 71.9
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 5.6e-20 100.9 64 71.9
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 5.6e-20 100.9 64 71.9
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 5.6e-20 100.9 64 71.9
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 5.6e-20 100.9 70 68.6
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 7.4e-20 100.5 69 68.1
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 9.6e-20 100.1 68 69.1
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.3e-19 99.8 65 73.8
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.3e-19 99.8 64 71.9
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 1.3e-19 99.8 69 68.1
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 1.6e-19 99.4 64 71.9
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 1.6e-19 99.4 65 72.3
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 1.6e-19 99.4 65 72.3
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.6e-19 99.4 71 66.2
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 2.1e-19 99.0 76 61.8
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.1e-19 99.0 73 67.1
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 2.8e-19 98.6 68 70.6
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 2.8e-19 98.6 67 68.7
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 3.7e-19 98.2 66 69.7
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 3.7e-19 98.2 66 68.2
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 3.7e-19 98.2 68 67.6
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 3.7e-19 98.2 73 63.0
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 6.2e-19 97.4 65 72.3
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 8.2e-19 97.1 64 71.9
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 8.2e-19 97.1 69 66.7
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 8.2e-19 97.1 68 69.1
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 8.2e-19 97.1 65 70.8
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 8.2e-19 97.1 73 64.4
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 1.1e-18 96.7 65 70.8
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.4e-18 96.3 65 72.3
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.4e-18 96.3 66 71.2
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.8e-18 95.9 66 66.7
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.8e-18 95.9 68 66.2
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 1.8e-18 95.9 70 67.1
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.8e-18 95.9 65 70.8
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 1.8e-18 95.9 72 63.9
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 2.4e-18 95.5 72 68.1
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.4e-18 95.5 65 70.8
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 2.4e-18 95.5 76 61.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 3.1e-18 95.1 73 64.4
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 5.3e-18 94.4 65 70.8
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 6.9e-18 94.0 66 66.7
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 6.9e-18 94.0 68 66.2
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 6.9e-18 94.0 72 63.9
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 9.0e-18 93.6 68 66.2
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 9.0e-18 93.6 71 63.4
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 9.0e-18 93.6 65 69.2
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.2e-17 93.2 70 64.3
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 1.5e-17 92.8 59 72.9
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.5e-17 92.8 65 69.2
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 2.0e-17 92.4 76 60.5
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 2.0e-17 92.4 75 57.3
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 2.0e-17 92.4 71 62.0
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 4.5e-17 91.3 76 60.5
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 5.8e-17 90.9 69 63.8
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 7.6e-17 90.5 65 67.7
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 1.0e-16 90.1 74 58.1
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.3e-16 89.7 72 61.1
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 2.2e-16 89.0 67 62.7
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 4.9e-16 87.8 68 64.7
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 2.5e-15 85.5 72 59.7
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 4.2e-15 84.7 77 59.7
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 9.3e-15 83.6 67 59.7
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.6e-14 82.8 75 57.3
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 1.8e-13 79.3 61 63.9
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 3.9e-13 78.2 66 59.1
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 1.1e-12 76.6 66 57.6
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 1.0e-08 63.5 64 51.6
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 2.9e-08 62.0 40 70.0
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 6.5e-08 60.8 38 65.8


User provided reference genes

Program Settings