Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 3.8e-227 791.2 405 100.0
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.1e-226 789.6 405 99.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.2e-226 788.1 405 99.5
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.6e-217 758.1 406 93.6
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.0e-216 756.5 406 93.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.9e-215 752.3 405 95.3
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 9.7e-207 723.4 426 87.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 4.7e-201 704.5 406 87.2
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.2e-198 695.7 403 86.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 3.7e-198 694.9 412 85.9
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.2e-198 693.7 409 85.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.4e-197 693.0 407 85.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.4e-197 693.0 409 85.8
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.4e-197 692.2 423 84.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 3.1e-197 691.8 405 85.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 4.1e-197 691.4 409 85.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 5.3e-197 691.0 404 85.9
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 5.3e-197 691.0 408 86.0
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 7.0e-197 690.6 407 85.3
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.2e-196 689.9 404 85.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.6e-196 689.5 405 85.2
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.6e-196 689.5 407 86.2
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.0e-196 689.1 408 84.8
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.6e-196 688.7 406 85.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 2.6e-196 688.7 408 86.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.6e-196 688.7 409 85.1
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 3.5e-196 688.3 411 84.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.5e-196 688.3 405 85.2
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 7.7e-196 687.2 406 86.2
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.0e-195 686.8 421 83.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.0e-195 686.8 405 85.7
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.0e-195 686.8 406 86.5
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.0e-195 686.8 405 85.2
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.3e-195 686.4 424 83.3
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.2e-195 685.6 405 84.9
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 2.2e-195 685.6 405 85.4
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.9e-195 685.3 410 84.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.8e-195 684.9 405 84.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 3.8e-195 684.9 404 85.1
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.0e-195 684.5 410 84.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 5.0e-195 684.5 409 86.1
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 6.5e-195 684.1 405 84.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.5e-195 684.1 405 84.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 6.5e-195 684.1 406 85.0
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.5e-195 683.7 408 85.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.5e-194 682.9 407 84.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.5e-194 682.2 411 85.6
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.5e-194 682.2 411 85.6
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 3.2e-194 681.8 419 83.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.2e-194 681.4 411 85.6
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.2e-194 681.4 405 84.4
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 4.2e-194 681.4 405 84.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 5.5e-194 681.0 411 83.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 7.2e-194 680.6 411 84.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 7.2e-194 680.6 410 84.1
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.2e-193 679.9 411 84.2
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.2e-193 679.9 405 84.7
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 83.7
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 83.9
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.6e-193 679.5 411 84.4
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.6e-193 679.5 406 86.9
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.1e-193 679.1 406 84.2
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.7e-193 678.7 413 83.8
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 85.4
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 3.6e-193 678.3 411 83.9
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 3.6e-193 678.3 411 83.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.6e-193 678.3 408 86.5
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.7e-193 677.9 408 83.8
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 6.1e-193 677.6 406 86.2
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 6.1e-193 677.6 407 85.0
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 6.1e-193 677.6 405 84.0
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.0e-192 676.8 411 83.2
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.0e-192 676.8 405 84.0
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.4e-192 676.4 406 83.5
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.4e-192 676.4 410 84.9
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.4e-192 676.4 407 83.3
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 84.8
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 85.0
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 85.0
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.8e-192 676.0 370 90.3
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.3e-192 675.6 405 83.7
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.0e-192 675.2 410 82.9
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.7e-192 674.1 421 82.2
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 6.7e-192 674.1 409 83.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.7e-192 674.1 407 83.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 8.8e-192 673.7 352 94.0
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.4e-191 671.4 351 93.2
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 9.7e-191 670.2 417 84.7
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 4.8e-190 667.9 408 83.6
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.3e-190 667.5 411 84.7
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 8.2e-190 667.2 408 84.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-189 666.4 415 82.4
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.8e-189 666.0 407 83.5
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.1e-189 664.8 406 85.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 5.3e-189 664.5 410 84.1
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.0e-188 662.5 409 84.1
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 2.0e-188 662.5 382 86.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 4.5e-188 661.4 407 83.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 4.5e-188 661.4 406 81.8
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 5.9e-188 661.0 404 82.2
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.8e-187 658.3 407 80.3
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.0e-187 657.9 425 81.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 3.2e-186 655.2 405 81.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.4e-186 653.7 405 80.2
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 8.0e-185 650.6 386 85.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.6e-183 645.6 350 89.4
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 2.8e-177 625.5 333 91.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 5.2e-176 621.3 350 85.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 8.8e-176 620.5 376 84.0
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.1e-170 603.6 349 82.5
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 7.3e-170 600.9 401 74.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 6.1e-169 597.8 352 81.2
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.0e-168 595.5 408 74.5
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 2.0e-167 592.8 410 77.1
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.4e-160 570.1 338 84.6
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 3.7e-158 562.0 401 74.1
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 3.5e-156 555.4 335 86.6
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 7.3e-154 547.7 320 88.1
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 4.1e-149 531.9 317 85.2
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.1e-148 529.6 348 73.6
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.4e-143 512.3 389 64.8
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.9e-142 508.4 311 82.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.7e-140 502.7 262 90.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 7.8e-140 501.1 403 67.7
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.1e-138 497.3 344 70.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 2.1e-132 476.5 290 83.1
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.3e-131 473.8 299 82.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.5e-130 469.5 340 67.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.6e-129 466.8 352 66.2
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.1e-128 462.6 248 90.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.7e-118 430.3 285 77.5
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.6e-114 414.5 280 74.3
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 4.5e-103 379.0 228 78.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.8e-97 359.0 322 62.1
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 8.3e-57 225.3 132 83.3
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-56 224.9 132 82.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.3e-54 217.2 349 39.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-45 185.7 118 78.0
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-45 185.7 118 77.1
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.4e-40 169.5 104 81.7
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.7e-39 167.2 103 81.6
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.7e-39 167.2 103 81.6
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.8e-36 157.1 98 80.6
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 9.9e-34 148.7 94 78.7
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.2e-33 147.5 94 75.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 8.9e-27 125.6 93 71.0
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.0e-26 124.4 148 51.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-24 117.5 105 63.8
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.6e-23 113.2 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.3e-22 110.9 59 88.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-20 104.0 47 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.0e-19 99.0 59 83.1
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 9.0e-19 99.0 62 80.6
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-18 98.6 81 65.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 1.6e-07 61.6 53 62.3
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 2.1e-07 61.2 79 53.2


User provided reference genes

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