Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.4e-121 438.0 219 100.0
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 8.1e-99 364.0 196 93.4
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.1e-98 363.6 196 92.9
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 6.8e-98 360.9 196 92.3
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 8.9e-98 360.5 196 92.3
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.4e-95 353.2 196 90.8
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 6.9e-82 307.8 196 78.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 4.9e-80 301.6 203 75.4
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 8.4e-80 300.8 195 76.4
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.9e-79 299.7 195 74.4
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 7.1e-79 297.7 195 74.9
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 7.1e-79 297.7 196 75.0
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.2e-78 297.0 196 75.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.6e-78 296.6 197 75.6
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 2.7e-78 295.8 196 75.5
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 2.7e-78 295.8 195 75.4
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.5e-78 295.4 194 73.7
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 1.3e-77 293.5 196 73.5
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.7e-77 293.1 195 74.4
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.7e-77 293.1 190 75.3
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.3e-77 292.7 195 75.4
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.0e-77 292.4 196 74.5
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 3.9e-77 292.0 195 75.4
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 3.9e-77 292.0 196 75.0
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 3.9e-77 292.0 196 76.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.5e-76 290.0 196 73.5
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.3e-76 288.9 194 73.2
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.3e-76 288.5 194 73.7
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 4.3e-76 288.5 196 73.0
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 9.6e-76 287.3 192 75.0
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-75 287.0 196 74.0
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 1.6e-75 286.6 194 73.7
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.1e-75 286.2 194 72.2
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.8e-75 285.8 194 73.2
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 2.8e-75 285.8 192 75.5
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 3.6e-75 285.4 195 73.8
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.6e-75 285.4 195 72.8
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 4.8e-75 285.0 194 72.2
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.8e-75 285.0 194 72.2
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.8e-75 285.0 194 72.2
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 8.1e-75 284.3 194 72.2
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.4e-74 283.5 195 71.3
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 5.3e-74 281.6 196 73.5
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 5.3e-74 281.6 198 73.7
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 5.8e-73 278.1 195 70.3
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 9.9e-73 277.3 189 74.6
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-72 276.9 196 71.9
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.3e-72 276.9 195 69.7
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 6.4e-72 274.6 191 72.8
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 2.4e-71 272.7 195 67.7
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 4.2e-71 271.9 192 69.8
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 7.1e-71 271.2 194 70.6
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.6e-70 270.0 196 68.9
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 3.5e-70 268.9 191 71.2
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 6.0e-70 268.1 192 70.3
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.3e-69 266.9 192 70.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.3e-69 266.9 192 70.8
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 3.0e-69 265.8 197 67.5
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 3.0e-69 265.8 196 69.4
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.1e-69 265.0 195 68.2
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.1e-69 265.0 176 76.1
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 5.1e-69 265.0 198 69.2
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 8.7e-69 264.2 195 68.2
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-68 263.8 195 67.2
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 1.1e-68 263.8 195 66.2
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.5e-68 263.5 197 68.0
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.5e-68 263.5 197 68.0
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 1.5e-68 263.5 195 66.2
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.9e-68 263.1 195 67.2
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.9e-68 263.1 195 66.2
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.5e-68 262.7 192 69.3
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.5e-68 262.7 192 69.3
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.3e-68 262.3 195 68.2
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 5.6e-68 261.5 190 71.6
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 5.6e-68 261.5 195 65.6
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 9.6e-68 260.8 191 68.1
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.6e-67 260.0 197 68.5
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 3.7e-67 258.8 195 65.6
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 4.8e-67 258.5 195 64.6
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.4e-66 256.9 195 64.1
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.8e-66 256.5 195 63.6
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 6.9e-66 254.6 195 64.1
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.5e-65 253.4 197 66.5
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.6e-65 252.7 181 69.6
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.4e-65 252.3 197 64.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 4.5e-65 251.9 197 64.5
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 5.8e-65 251.5 191 67.5
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 7.6e-65 251.1 196 68.9
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.3e-64 250.4 197 64.0
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-64 250.4 197 63.5
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.7e-64 250.0 196 64.8
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-64 249.6 197 62.4
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 2.2e-64 249.6 197 62.9
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 4.9e-64 248.4 197 62.9
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 4.9e-64 248.4 197 62.9
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 6.5e-64 248.1 197 62.9
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 6.5e-64 248.1 197 62.9
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.4e-63 246.9 197 63.5
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.4e-63 246.9 197 62.4
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 3.2e-63 245.7 197 63.5
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.2e-63 245.7 196 63.3
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 5.5e-63 245.0 197 62.4
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 5.5e-63 245.0 204 64.7
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 7.1e-63 244.6 191 63.4
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 7.1e-63 244.6 195 61.5
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.2e-62 243.8 201 62.2
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.6e-62 243.4 189 63.0
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.6e-62 243.4 192 62.5
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 7.9e-62 241.1 195 62.1
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 5.1e-61 238.4 196 58.7
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 6.7e-61 238.0 189 66.1
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 6.7e-61 238.0 191 62.8
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.9e-60 236.5 197 59.9
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 5.7e-60 235.0 191 61.8
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 9.6e-60 234.2 198 60.6
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.6e-60 234.2 196 60.2
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 1.6e-59 233.4 195 59.0
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.4e-58 229.6 195 61.5
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.3e-56 223.8 196 56.6
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 4.2e-55 218.8 197 55.8
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.1e-53 211.8 142 76.1
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 7.4e-52 208.0 197 55.8
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.3e-51 207.2 182 57.7
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.6e-46 190.3 152 63.8
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.0e-45 186.0 195 54.4
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.9e-45 185.7 191 54.5
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 7.4e-44 181.4 192 47.9
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-42 177.6 160 58.1
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 1.4e-42 177.2 132 65.9
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.1e-42 176.0 154 57.1
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.0e-41 173.3 140 62.9
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 2.2e-40 169.9 188 49.5
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.1e-38 161.8 153 54.2
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-33 147.1 130 56.9
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-32 144.4 130 57.7
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 6.5e-32 141.7 105 64.8
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-31 140.6 130 56.9
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 5.5e-31 138.7 181 43.1
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.5e-28 130.6 198 40.4
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 5.7e-28 128.6 68 89.7
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.3e-27 125.2 144 50.0
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-25 120.6 84 71.4
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-25 119.4 114 55.3
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 4.5e-25 119.0 295 30.2
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.7e-22 109.8 73 72.6
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.3e-21 106.7 74 68.9
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.0e-21 105.9 178 39.3
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-20 104.0 92 54.3
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 5.4e-18 95.5 70 65.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.4e-18 95.5 94 55.3
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-16 90.1 94 53.2
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 2.9e-16 89.7 67 61.2
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.5e-16 88.6 95 49.5
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 7.2e-15 85.1 91 52.7
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 1.6e-14 84.0 57 70.2
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-14 84.0 92 48.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.6e-14 82.8 95 49.5
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.8e-13 80.5 64 60.9
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.0e-12 77.0 49 73.5
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 5.7e-12 75.5 157 33.1
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.3e-11 74.3 59 62.7
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 2.2e-11 73.6 129 34.9
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.2e-10 68.2 53 56.6
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-09 67.4 84 44.0
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.0e-08 64.7 58 53.4
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-08 64.7 84 41.7
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.0e-08 62.4 43 62.8
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.1e-06 57.0 34 73.5
Actinidia23574 Actinidia chinensis HOM05D003501 ORTHO05D057363 8.0e-06 55.1 155 31.6


User provided reference genes

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