Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 2639.0 1324 100.0
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 2543.5 1324 96.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 2423.7 1328 91.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 2381.7 1325 89.9
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 2365.9 1325 89.1
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 2291.5 1335 86.1
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1815.0 1337 68.7
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1785.8 1316 68.5
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1781.1 1340 67.6
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1771.9 1327 66.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1748.4 1338 66.7
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1733.0 1290 68.2
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1731.1 1341 65.4
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1721.1 1341 65.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1715.7 1402 63.2
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1707.6 1338 64.9
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1701.8 1342 65.0
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1691.8 1336 64.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1690.6 1253 66.3
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1689.1 1337 64.0
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1676.4 1335 64.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1672.1 1335 63.7
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1671.0 1339 64.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1669.8 1337 64.3
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1666.4 1482 59.9
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1661.0 1337 63.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1659.0 1335 64.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1658.3 1340 63.7
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1654.4 1335 62.9
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1649.0 1318 64.3
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1639.8 856 96.5
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1638.2 1340 62.5
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1633.2 1336 62.6
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1630.5 1336 62.6
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1630.5 1336 62.6
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1630.2 1336 62.7
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1614.0 1338 62.5
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1611.7 1335 62.9
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1609.7 1381 60.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1604.3 1331 62.4
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1601.6 1339 62.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1596.6 1351 61.1
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1594.3 1332 61.2
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1325 62.5
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1585.9 1341 60.9
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1582.4 1334 60.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1573.5 1333 60.4
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1573.1 1338 60.2
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1570.1 1339 60.5
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1561.2 1335 60.0
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1559.3 1336 60.1
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1558.9 1344 60.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1557.7 1341 60.2
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1552.0 1311 60.1
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1548.5 1342 60.9
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1547.3 1347 60.2
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1546.9 1217 64.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1544.3 1217 64.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1542.3 1336 59.9
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1541.9 1333 59.9
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1540.0 1343 59.0
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1540.0 1331 59.4
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1540.0 1333 59.9
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1538.5 1332 59.1
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1535.8 1335 59.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1533.9 1346 59.2
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1527.3 1337 59.4
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1526.5 1336 58.8
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1524.2 1335 58.4
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1504.6 1254 61.5
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1498.8 1326 59.1
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1492.2 1319 58.7
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1471.8 1322 58.2
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1470.7 1321 58.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1462.2 1321 58.6
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1449.5 1342 56.9
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1410.6 1295 56.2
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1400.2 1337 55.4
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1392.5 1338 54.6
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1383.6 1339 55.0
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1368.2 1324 56.4
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1364.7 1329 54.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1363.6 1335 54.2
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1359.7 1328 54.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1359.4 1328 54.4
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1357.0 1329 54.3
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1357.0 1329 54.3
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1356.3 1319 55.3
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1353.2 1336 54.1
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1353.2 1335 54.8
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1265.8 1330 51.1
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1255.0 1317 51.6
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1244.2 982 65.8
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1239.2 907 66.7
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1221.1 1101 57.9
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1213.7 1348 48.3
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1149.8 990 59.9
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1105.1 1246 48.0
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 3.5e-282 975.7 1305 44.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 2.5e-275 953.0 1322 42.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.9e-260 902.9 1312 41.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.0e-252 877.9 1274 41.2
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.3e-236 824.3 1326 38.1
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.4e-225 787.7 1134 41.4
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.0e-220 769.2 960 45.7
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 4.9e-167 593.2 589 52.6
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 7.4e-163 579.3 484 61.4
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.3e-161 573.2 589 54.5
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.9e-119 434.5 1156 29.4
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.5e-102 379.0 316 59.5
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 7.5e-99 366.7 329 59.6
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.3e-95 355.9 291 60.5
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.5e-94 351.7 378 50.8
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.0e-91 342.0 1044 28.7
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 6.6e-79 300.4 263 63.1
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 5.8e-67 260.8 235 56.6
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 6.0e-64 250.8 229 56.8
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 9.6e-62 243.4 309 43.4
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-58 232.6 188 60.1
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 6.9e-52 210.7 300 41.0
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.4e-51 208.4 148 69.6
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.9e-31 141.7 126 57.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 6.7e-31 141.0 119 59.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.2e-27 130.2 640 25.6
CAN.G29.3 Capsicum annuum HOM05D005691 ORTHO05D007096 7.2e-25 120.9 82 75.6
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.6e-24 119.8 99 55.6
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 7.0e-20 104.4 122 48.4
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 8.5e-18 97.4 77 66.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.8e-13 82.4 106 44.3
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.3e-12 78.2 65 63.1
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 1.5e-06 60.1 236 25.8
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 2.0e-06 59.7 71 47.9
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 2.0e-06 59.7 71 47.9
BolC7t41436H Brassica oleracea HOM05D005691 ORTHO05D007096 2.6e-06 59.3 136 33.8


User provided reference genes

Program Settings