Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.9e-98 362.5 180 100.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-92 343.2 178 95.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.3e-91 339.0 178 94.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.3e-91 339.0 178 94.9
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.0e-91 338.6 178 94.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.7e-91 337.0 178 93.8
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 7.6e-87 323.9 178 90.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-81 305.8 178 83.7
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.5e-77 292.4 173 80.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.1e-77 290.8 173 80.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.5e-63 246.5 171 70.8
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 5.9e-63 244.6 168 71.4
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 5.5e-61 238.0 173 66.5
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 5.5e-61 238.0 171 66.1
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.5e-61 238.0 166 68.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 7.2e-61 237.7 170 67.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.2e-60 236.9 171 66.7
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.6e-60 236.5 179 67.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.1e-60 236.1 164 68.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.1e-60 236.1 174 66.1
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.1e-60 236.1 179 64.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.6e-60 235.0 171 65.5
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.1e-60 234.6 164 68.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 7.9e-60 234.2 164 68.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.4e-59 233.4 175 65.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.8e-59 233.0 164 67.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.3e-59 232.6 170 64.7
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.3e-59 232.6 164 68.3
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 3.0e-59 232.3 164 68.3
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.9e-59 231.9 164 67.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.9e-59 231.9 180 64.4
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 6.7e-59 231.1 180 63.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 8.8e-59 230.7 168 66.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.5e-58 229.9 180 61.7
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.5e-58 229.9 171 67.3
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 4.4e-58 228.4 177 63.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.4e-58 228.4 177 63.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.4e-58 228.4 166 65.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 4.4e-58 228.4 168 64.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 4.4e-58 228.4 174 65.5
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.4e-58 227.6 171 64.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 7.4e-58 227.6 179 64.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.3e-57 226.9 164 63.4
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.3e-57 226.9 175 62.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.2e-57 226.1 177 63.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.2e-57 226.1 177 63.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.8e-57 225.7 164 66.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.8e-57 225.7 177 62.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.7e-57 225.3 166 66.3
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 4.8e-57 224.9 172 66.9
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.8e-57 224.9 176 62.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 8.2e-57 224.2 168 62.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 8.2e-57 224.2 174 62.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.1e-56 223.8 164 65.9
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.4e-56 222.6 164 63.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.1e-56 222.2 166 62.7
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.1e-56 222.2 164 65.2
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.9e-56 221.1 171 60.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 6.9e-56 221.1 164 65.2
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.5e-55 219.9 164 65.2
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.0e-55 219.5 178 60.1
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.4e-55 218.8 173 61.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.3e-54 216.9 164 64.0
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.7e-54 216.5 178 60.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.2e-54 216.1 165 63.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.8e-54 215.3 164 64.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.0e-54 214.9 171 63.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.1e-53 213.8 164 64.0
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-53 213.4 164 62.2
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.2e-53 211.8 171 61.4
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.5e-53 211.5 171 60.8
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.5e-53 211.5 199 54.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.4e-53 210.7 164 61.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.2e-52 210.3 171 61.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-52 210.3 142 69.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.7e-52 208.4 166 61.4
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.0e-51 207.2 166 57.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.4e-51 206.8 171 60.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.8e-51 206.5 166 59.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 5.2e-51 204.9 174 58.0
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.2e-51 204.9 171 60.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 6.7e-51 204.5 166 57.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.1e-50 203.8 175 59.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-50 202.6 174 57.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.4e-50 201.8 165 62.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 7.4e-50 201.1 174 57.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 7.4e-50 201.1 165 60.0
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.4e-50 201.1 187 57.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.3e-49 200.3 166 56.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-49 200.3 168 56.0
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.2e-49 199.5 178 57.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.8e-49 199.1 164 59.8
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 8.2e-49 197.6 173 52.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.4e-48 196.8 171 59.1
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.8e-48 196.4 164 58.5
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.8e-48 196.4 164 58.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.6e-47 192.6 147 63.9
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.9e-47 191.4 179 57.0
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.0e-46 190.7 163 55.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.7e-46 189.9 175 55.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.8e-46 188.7 163 56.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 8.5e-46 187.6 164 56.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.2e-45 185.7 164 54.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-44 183.3 164 56.1
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-43 179.5 164 53.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 6.7e-43 177.9 166 51.2
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.7e-42 174.9 159 51.6
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 7.5e-42 174.5 159 51.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.2e-41 172.9 164 51.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.3e-41 171.4 164 54.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 6.3e-41 171.4 164 54.3
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 8.2e-41 171.0 164 51.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 8.2e-41 171.0 164 52.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-40 169.9 164 52.4
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.1e-40 168.7 164 53.7
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 4.1e-40 168.7 164 54.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.1e-40 168.7 164 53.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.1e-40 167.5 165 52.7
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 9.1e-40 167.5 164 51.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.2e-38 162.9 122 64.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 5.0e-38 161.8 145 54.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 8.0e-36 154.5 159 47.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.1e-32 142.5 103 66.0
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.5e-31 138.7 166 42.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.5e-30 134.8 165 41.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.0e-28 127.9 103 59.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.8e-27 124.4 96 66.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 7.5e-26 121.3 99 56.6
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-15 86.7 104 39.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-14 84.0 52 71.2
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.2e-10 70.9 67 55.2
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 7.5e-10 68.2 56 57.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.3e-09 64.7 86 40.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-08 64.3 65 53.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.9e-08 63.5 41 70.7
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.5e-07 59.3 61 52.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 7.8e-07 58.2 48 54.2
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.6e-06 54.7 103 35.9


User provided reference genes

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