Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-174 616.7 337 100.0
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 7.4e-168 594.0 337 96.7
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.0e-165 585.9 337 96.1
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.0e-165 585.9 337 96.1
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.5e-165 584.7 337 95.8
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.5e-165 584.7 337 95.8
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 5.8e-165 584.3 337 95.3
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 8.5e-156 553.9 338 90.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-155 553.5 337 89.3
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.9e-155 552.7 337 89.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 7.9e-154 547.4 337 90.2
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 89.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 89.6
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 88.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.3e-153 545.8 338 89.3
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.1e-153 544.7 338 87.6
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.7e-153 544.3 337 89.3
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 88.7
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 88.4
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 88.7
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 89.3
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.8e-151 538.9 337 88.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 4.8e-151 538.1 338 87.6
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 4.8e-151 538.1 338 88.5
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 87.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 339 89.1
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.4e-150 536.6 337 84.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.8e-150 536.2 337 89.0
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.8e-150 536.2 337 88.1
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 88.4
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 87.8
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 87.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.1e-150 535.0 338 87.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 5.3e-150 534.6 337 87.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.9e-150 534.3 338 89.1
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.2e-149 533.5 355 85.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.2e-149 533.5 355 85.1
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.0e-149 532.7 337 88.1
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.0e-149 532.7 339 88.5
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 3.4e-149 531.9 349 86.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 87.2
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.7e-149 530.8 337 86.6
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.6
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 87.2
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 2.9e-148 528.9 337 88.1
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 86.4
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 87.6
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 88.4
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.4e-147 526.6 359 84.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.9e-147 526.2 352 85.2
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.5e-147 525.8 341 86.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 3.2e-147 525.4 336 85.4
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 3.2e-147 525.4 336 85.4
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 9.4e-147 523.9 354 85.0
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.2e-146 523.5 339 87.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.6e-146 523.1 337 85.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 338 85.5
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 4.7e-146 521.5 340 86.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 7.9e-146 520.8 338 84.0
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.4e-145 520.0 338 85.2
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 85.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.1e-145 518.1 338 85.2
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 5.1e-145 518.1 339 86.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 6.7e-145 517.7 330 88.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.5e-144 516.5 340 85.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 86.4
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.0e-144 516.2 338 82.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 2.0e-144 516.2 338 82.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.3e-144 515.4 337 84.9
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.3e-144 515.4 337 79.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.3e-144 515.4 337 84.6
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 4.4e-144 515.0 340 85.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 5.7e-144 514.6 365 80.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.3e-143 513.5 337 84.3
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.3e-143 513.5 337 86.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.3e-143 511.1 337 83.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.1e-142 510.4 321 88.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.4e-142 510.0 372 78.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.5e-141 506.5 337 85.8
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.6e-141 505.8 377 77.2
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 84.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 84.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 84.0
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.9e-140 502.3 349 83.1
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-140 501.9 345 82.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 6.5e-140 501.1 347 81.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 8.5e-140 500.7 347 81.8
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.2e-138 496.9 338 83.4
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.6e-138 496.5 340 80.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.7e-138 495.0 330 83.9
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 6.1e-138 494.6 331 83.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 4.0e-137 491.9 337 78.3
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 6.7e-137 491.1 337 81.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.0e-136 489.6 321 85.4
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 5.7e-136 488.0 338 82.0
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 3.7e-135 485.3 321 85.0
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.8e-135 485.0 337 80.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.2
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.6e-133 479.9 367 76.3
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.8e-132 475.3 337 81.6
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 3.2e-131 472.2 305 88.5
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.0e-129 465.7 337 79.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 5.2e-129 464.9 337 73.0
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.4e-128 461.8 366 75.1
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.4e-128 461.8 366 75.1
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.2e-124 449.5 338 78.4
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.0e-121 438.7 334 78.7
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 6.8e-121 438.0 352 73.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.5e-117 425.2 284 84.5
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.6e-114 415.6 516 54.5
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 6.1e-114 414.8 274 87.6
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.4e-111 404.8 225 88.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.5e-107 392.9 339 72.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.7e-103 380.2 321 72.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.4e-102 375.2 324 72.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.4e-97 360.5 255 85.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-94 350.5 337 65.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.2e-94 349.4 277 74.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.7e-93 346.3 337 65.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.3e-89 333.2 382 49.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.1e-82 310.1 147 98.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.7e-79 300.4 330 52.4
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-65 254.6 171 74.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.6e-64 250.0 211 77.7
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.0e-60 238.0 326 45.1
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 116 86.2
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.3e-43 179.9 82 98.8
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 7.4e-43 178.7 165 65.5
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-39 168.3 91 90.1
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.9e-36 156.4 90 92.2
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.7e-36 155.6 90 90.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 8.5e-23 112.1 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 9.4e-22 108.6 64 90.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.1e-17 93.6 272 28.7
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 9.1e-17 92.0 200 28.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.7e-13 80.5 83 74.7
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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