Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 0.0e+00 1154.8 595 100.0
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 9.9e-301 1036.2 597 87.4
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 9.9e-301 1036.2 598 87.6
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.3e-300 1035.8 597 86.8
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.7e-300 1035.4 595 87.2
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 1.6e-298 1028.9 601 85.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 6.0e-298 1026.9 597 86.1
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 3.7e-295 1017.7 598 85.5
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 3.1e-294 1014.6 598 84.9
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 5.3e-294 1013.8 634 80.9
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 3.4e-293 1011.1 597 83.8
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.7e-292 1008.8 592 85.3
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.1e-291 1006.1 597 83.8
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.4e-291 1005.7 597 83.9
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.6e-290 1002.3 598 84.1
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 1.6e-290 1002.3 597 83.2
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.9e-290 1000.0 598 83.9
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.0e-289 999.6 597 81.4
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.9e-288 995.3 597 82.1
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 1.3e-287 992.6 597 80.7
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.6e-287 992.3 597 82.4
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 2.1e-287 991.9 597 83.4
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.8e-287 991.5 597 82.2
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 8.2e-287 989.9 635 80.6
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.8e-286 988.8 595 83.9
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 2.4e-286 988.4 597 82.6
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 2.4e-286 988.4 598 82.9
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 9.0e-286 986.5 595 83.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 5.8e-285 983.8 595 83.2
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 1.7e-284 982.2 597 82.4
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.2e-283 977.6 597 81.6
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.6e-282 975.7 606 80.9
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 2.7e-282 974.9 597 81.4
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 3.5e-282 974.5 597 81.2
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 4.6e-282 974.2 597 81.2
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.5e-280 968.4 594 80.8
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 7.4e-280 966.8 584 81.7
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 9.7e-280 966.5 556 86.7
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 3.7e-279 964.5 597 80.2
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.1e-278 963.0 594 80.6
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.8e-278 962.2 595 81.8
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.8e-278 962.2 595 81.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.1e-278 961.4 595 81.8
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 3.1e-278 961.4 647 75.9
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 5.3e-278 960.7 594 80.1
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.9e-277 957.2 595 81.8
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.9e-277 957.2 595 81.8
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 7.7e-277 956.8 594 80.5
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 2.9e-276 954.9 597 81.2
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 1.1e-275 953.0 603 79.8
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 3.9e-273 944.5 597 80.4
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.1e-272 943.0 601 79.0
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.7e-271 937.9 597 79.7
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.0e-269 932.2 620 76.0
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.1e-267 926.4 595 78.2
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.2e-266 922.9 598 78.9
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.1e-266 922.2 595 76.5
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 2.1e-266 922.2 595 76.1
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 3.6e-266 921.4 568 81.9
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 4.7e-266 921.0 596 78.7
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 7.9e-266 920.2 625 75.7
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 1.4e-265 919.5 595 76.8
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 5.1e-265 917.5 615 77.2
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.1e-264 916.4 595 76.3
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 9.7e-264 913.3 564 81.7
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 2.8e-263 911.8 597 75.5
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 4.8e-263 911.0 595 75.6
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 4.8e-263 911.0 595 76.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 4.8e-263 911.0 595 76.0
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 6.3e-263 910.6 597 77.4
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 7.7e-261 903.7 595 76.5
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 3.8e-260 901.4 598 75.1
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 2.1e-258 895.6 596 75.3
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 4.7e-258 894.4 597 76.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 5.2e-257 891.0 597 76.4
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.2e-257 891.0 605 76.7
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 8.8e-257 890.2 596 76.3
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 3.7e-255 884.8 595 75.0
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 3.7e-255 884.8 595 75.0
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.1e-254 883.2 595 74.5
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.8e-254 882.5 532 82.1
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 5.3e-254 880.9 548 80.5
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 7.0e-254 880.6 597 76.4
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 9.1e-254 880.2 596 74.8
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 7.7e-253 877.1 631 72.6
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.5e-251 872.1 615 72.0
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.3e-247 859.8 508 84.3
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.0e-245 852.4 595 72.8
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.7e-244 849.4 597 72.2
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.1e-243 846.7 595 70.3
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.6e-242 841.6 605 72.9
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 4.7e-242 841.3 595 69.7
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 8.0e-242 840.5 634 70.3
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.4e-241 839.7 577 74.2
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 9.5e-235 817.0 597 71.2
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 6.1e-234 814.3 509 79.8
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 8.3e-231 803.9 646 67.3
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 1.3e-228 796.6 609 67.0
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 5.2e-225 784.6 578 72.5
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.6e-224 782.3 580 70.9
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 5.8e-224 781.2 605 67.4
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.3e-220 769.2 592 66.7
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.5e-219 766.5 605 68.1
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 4.3e-211 738.4 419 86.9
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.6e-205 719.9 594 65.3
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 1.6e-205 719.9 597 64.5
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 3.0e-204 715.7 605 60.3
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 3.3e-195 685.6 420 82.4
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 9.6e-195 684.1 608 58.6
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 4.2e-190 668.7 390 85.1
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.1e-189 666.4 592 58.4
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 4.3e-187 658.7 595 57.3
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 2.2e-162 576.6 532 58.1
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 2.1e-149 533.5 314 83.4
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 5.5e-142 508.8 421 60.6
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 5.5e-142 508.8 359 74.1
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 1.5e-139 500.7 463 60.7
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 2.7e-136 490.0 329 74.5
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 2.1e-117 427.2 282 75.2
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 8.0e-117 425.2 276 76.8
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.9e-116 421.8 321 67.3
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 3.0e-111 406.8 317 66.2
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 2.1e-109 400.6 626 39.3
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 6.0e-104 382.5 241 80.5
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.5e-102 377.9 233 80.3
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.9e-102 377.5 300 66.0
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 4.4e-99 366.3 723 34.0
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.1e-93 347.4 233 70.8
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.8e-84 315.8 221 73.3
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.6e-83 313.9 271 62.7
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-82 311.6 286 59.1
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 1.7e-79 301.2 193 76.7
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 1.7e-79 301.2 286 57.0
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 9.9e-75 285.4 203 71.4
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-72 278.5 201 71.1
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 1.3e-69 268.5 147 89.8
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 9.0e-68 262.3 168 77.4
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 5.8e-67 259.6 723 27.8
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-65 254.6 300 51.0
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 1.2e-59 235.3 203 59.1
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-58 231.9 159 71.7
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-57 227.3 240 49.2
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 7.4e-54 216.1 151 77.5
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 3.4e-51 207.2 132 78.8
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 5.1e-47 193.4 121 77.7
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 1.6e-45 188.3 125 72.8
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.9e-44 183.0 145 64.8
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.5e-43 181.8 494 29.6
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 4.6e-40 170.2 131 63.4
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 5.5e-33 146.7 126 60.3
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 3.1e-28 131.0 153 49.0
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 3.6e-24 117.5 82 72.0
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 4.8e-21 107.1 77 71.4
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 6.3e-21 106.7 72 70.8
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.5e-18 96.7 115 53.0
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.6e-16 92.0 58 75.9
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 4.7e-16 90.5 52 78.8
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 6.1e-16 90.1 168 39.9
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 3.0e-15 87.8 51 78.4
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.4e-14 84.3 52 78.8
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.3e-13 82.4 51 76.5
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.8e-13 81.3 52 71.2
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 8.3e-13 79.7 84 56.0
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 2.4e-12 78.2 115 44.3
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 3.8e-10 70.9 69 53.6
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 1.9e-09 68.6 54 63.0
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 5.5e-09 67.0 41 70.7
Pp3c16_570 Physcomitrium patens HOM05D001793 ORTHO05D001938 7.2e-09 66.6 407 23.1
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.2e-09 66.6 44 70.5
MCO06G163 Micromonas commoda HOM05D001793 ORTHO05D001938 6.1e-08 63.5 288 26.7
Glyma.06G123000 Glycine max HOM05D004566 ORTHO05D006041 2.3e-07 61.6 504 19.6
Sopen05g016270 Solanum pennellii HOM05D004229 ORTHO05D026150 5.2e-07 60.5 44 68.2
Glyma.04G240400 Glycine max HOM05D004566 ORTHO05D006041 6.8e-07 60.1 506 19.4
Phvul.009G135100 Phaseolus vulgaris HOM05D004566 ORTHO05D006041 8.8e-07 59.7 496 17.9
CBR_g31666 Chara braunii HOM05D001793 ORTHO05D001938 1.2e-06 59.3 393 22.1
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.2e-06 59.3 70 50.0
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 1.5e-06 58.9 46 63.0
MBI11_g07422_MAGBIO Magnolia biondii HOM05D004566 ORTHO05D006041 2.6e-06 58.2 397 18.6
Pp3c18_21360 Physcomitrium patens HOM05D004566 ORTHO05D006041 2.6e-06 58.2 566 19.4
Zm00001eb172280 Zea mays HOM05D004566 ORTHO05D006041 3.4e-06 57.8 456 20.4
VMungo1309G3090 Vigna mungo HOM05D004566 ORTHO05D006041 5.7e-06 57.0 398 18.3
Solyc01g013980.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.5e-06 56.6 39 69.2


User provided reference genes

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