Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1636 Punica granatum HOM05D003327 ORTHO05D024157 1.1e-55 219.9 124 100.0
PGR083G0416 Punica granatum HOM05D003327 ORTHO05D024157 5.7e-33 144.4 84 86.9
PGR142G3638 Punica granatum HOM05D000494 ORTHO05D024157 2.1e-11 72.8 68 58.8
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 8.0e-11 70.9 50 74.0
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 4.4e-09 65.1 39 79.5
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 5.7e-09 64.7 42 76.2
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 5.7e-09 64.7 36 86.1
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 9.8e-09 63.9 57 57.9
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 9.8e-09 63.9 41 78.0
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 9.8e-09 63.9 41 78.0
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 9.8e-09 63.9 41 78.0
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 3.7e-08 62.0 39 76.9
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 4.9e-08 61.6 34 85.3
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 4.9e-08 61.6 34 85.3
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 4.9e-08 61.6 34 85.3
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 4.9e-08 61.6 34 85.3
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 4.9e-08 61.6 34 85.3
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 8.3e-08 60.8 41 75.6
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 1.4e-07 60.1 41 70.7
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.4e-07 60.1 34 82.4
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.8e-07 59.7 47 63.8
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 2.4e-07 59.3 35 77.1
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 2.4e-07 59.3 41 68.3
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.4e-07 59.3 35 80.0
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 3.1e-07 58.9 47 63.8
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 4.1e-07 58.5 48 64.6
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 4.1e-07 58.5 48 64.6
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 4.1e-07 58.5 35 77.1
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 4.1e-07 58.5 34 79.4
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 5.4e-07 58.2 38 71.1
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 5.4e-07 58.2 38 71.1
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 5.4e-07 58.2 36 75.0
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 5.4e-07 58.2 36 75.0
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 7.0e-07 57.8 38 71.1
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 7.0e-07 57.8 39 69.2
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 7.0e-07 57.8 39 69.2
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 7.0e-07 57.8 38 71.1
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 7.0e-07 57.8 32 84.4
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 7.0e-07 57.8 33 81.8
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 9.2e-07 57.4 34 76.5
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 1.2e-06 57.0 41 65.9
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.2e-06 57.0 34 76.5
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 1.2e-06 57.0 36 75.0
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 1.2e-06 57.0 36 75.0
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.6e-06 56.6 41 65.9
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.6e-06 56.6 33 78.8
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.6e-06 56.6 33 78.8
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.6e-06 56.6 35 74.3
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.6e-06 56.6 35 74.3
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 2.0e-06 56.2 35 71.4
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 2.0e-06 56.2 35 71.4
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 2.0e-06 56.2 35 71.4
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 2.0e-06 56.2 35 71.4
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 2.0e-06 56.2 35 71.4
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 2.0e-06 56.2 33 78.8
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 2.7e-06 55.8 35 74.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.5e-06 55.5 42 71.4
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 3.5e-06 55.5 33 75.8
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 4.5e-06 55.1 33 75.8
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 4.5e-06 55.1 33 75.8
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 4.5e-06 55.1 29 86.2
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 4.5e-06 55.1 33 75.8
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 4.5e-06 55.1 32 78.1
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 4.5e-06 55.1 33 75.8
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 5.9e-06 54.7 33 75.8
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 5.9e-06 54.7 33 75.8
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 5.9e-06 54.7 32 78.1
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 7.7e-06 54.3 33 75.8
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 7.7e-06 54.3 33 75.8
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 7.7e-06 54.3 33 75.8
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 7.7e-06 54.3 35 74.3


User provided reference genes

Program Settings