Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 9.0e-179 630.2 326 100.0
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.6e-127 459.9 332 71.4
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.7e-122 442.6 313 71.9
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 3.5e-122 442.2 314 71.3
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 4.5e-122 441.8 316 71.5
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 4.5e-122 441.8 316 71.5
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.0e-121 440.7 313 71.6
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.3e-121 440.3 319 69.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.3e-121 440.3 321 70.4
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.3e-121 440.3 325 69.5
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 6.5e-121 438.0 316 69.6
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.5e-121 438.0 315 70.2
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 6.5e-121 438.0 321 68.8
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.9e-120 436.4 319 68.0
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.5e-120 436.0 326 68.7
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 4.2e-120 435.3 312 72.8
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 9.5e-120 434.1 313 69.3
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.6e-119 433.3 328 68.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.1e-119 433.0 312 69.6
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.8e-118 429.9 342 65.5
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.3e-118 429.5 311 68.8
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.3e-118 429.5 336 66.4
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 3.0e-118 429.1 312 69.9
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.2e-117 427.2 315 70.5
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.5e-117 426.8 340 65.3
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.0e-117 426.4 316 68.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 2.6e-117 426.0 309 67.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 5.7e-117 424.9 315 68.6
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.7e-116 423.3 331 66.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 2.2e-116 422.9 318 67.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 8.3e-116 421.0 318 68.2
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.1e-115 420.6 315 66.7
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.8e-115 419.9 325 65.2
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 2.4e-115 419.5 316 70.6
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.1e-115 419.1 320 66.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 4.1e-115 418.7 317 65.6
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 4.1e-115 418.7 336 65.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.4e-115 418.3 315 66.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.2e-115 417.5 325 64.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 9.2e-115 417.5 272 75.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.6e-114 416.8 357 61.3
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.6e-114 416.8 323 64.4
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.0e-114 416.4 343 65.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 2.0e-114 416.4 349 63.0
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.3e-113 413.7 323 64.7
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 1.3e-113 413.7 323 64.7
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.3e-113 412.9 315 68.3
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 5.0e-113 411.8 333 66.1
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 6.6e-113 411.4 335 65.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 8.6e-113 411.0 274 73.7
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.6e-113 411.0 323 64.4
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 3.3e-112 409.1 271 73.1
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 4.3e-112 408.7 328 63.4
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 5.6e-112 408.3 329 63.8
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 7.3e-112 407.9 323 66.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.2e-111 407.1 353 61.5
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.6e-111 406.8 331 65.9
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.1e-111 406.4 268 72.4
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 4.7e-111 405.2 272 73.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 6.1e-111 404.8 319 63.9
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.0e-110 404.1 284 72.2
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.4e-110 403.7 330 61.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.3e-110 402.9 333 64.6
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 2.3e-110 402.9 332 63.3
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 8.9e-110 401.0 333 63.4
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 3.4e-109 399.1 336 63.4
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 9.8e-109 397.5 325 66.2
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.2e-108 396.4 325 64.3
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.9e-108 396.0 316 64.9
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.9e-108 395.2 328 65.5
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 8.3e-108 394.4 330 63.3
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.8e-107 393.3 329 62.0
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.8e-107 393.3 324 64.8
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.8e-107 393.3 324 64.8
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.8e-107 393.3 324 64.8
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.2e-107 392.5 339 62.5
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.0e-105 387.5 312 64.1
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.3e-105 387.1 286 68.2
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 3.9e-105 385.6 305 65.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.5e-104 383.6 321 62.6
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.5e-104 383.6 321 62.6
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.5e-104 383.6 321 62.6
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.5e-104 383.6 348 59.2
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 1.9e-104 383.3 269 67.7
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 3.3e-104 382.5 299 65.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.8e-103 379.4 293 66.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.1e-102 377.5 296 66.6
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.4e-102 377.1 292 66.4
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 8.9e-102 374.4 316 62.0
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.6e-101 372.9 315 62.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 4.4e-101 372.1 286 65.4
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.1e-99 367.5 315 61.9
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.1e-99 365.5 272 64.7
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 5.4e-99 365.2 304 63.5
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-97 359.0 269 63.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.6e-97 358.2 294 64.6
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.8e-95 352.8 209 81.8
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 4.7e-95 352.1 275 64.0
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 5.2e-94 348.6 318 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 8.9e-94 347.8 270 62.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.9e-94 347.8 268 61.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.2e-93 347.4 265 67.5
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.4e-91 340.5 215 75.8
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.7e-90 336.3 217 74.7
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 3.5e-90 335.9 289 61.9
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.5e-88 330.5 292 61.6
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 4.3e-88 328.9 366 51.6
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-87 327.0 275 59.6
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.1e-86 324.3 266 65.0
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 5.2e-86 322.0 310 55.8
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.9e-80 303.5 234 61.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.1e-79 300.1 235 62.1
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.4e-78 296.6 241 59.8
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 6.4e-76 288.5 241 59.3
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 5.8e-69 265.4 296 48.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 2.8e-63 246.5 205 62.4
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.0e-62 242.7 211 62.6
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.7e-60 237.3 225 57.3
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.9e-60 235.7 217 53.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 8.4e-60 235.0 167 68.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 7.4e-56 221.9 231 54.5
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.0e-53 213.8 185 56.8
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.7e-52 210.7 222 49.5
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 4.1e-46 189.5 205 51.7
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 5.5e-43 179.1 119 71.4
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-39 167.5 188 48.4
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.7e-39 166.4 119 70.6
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.7e-39 166.4 187 47.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 2.6e-37 160.2 100 74.0
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.7e-36 157.5 85 84.7
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-36 157.5 188 46.3
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 2.2e-36 157.1 102 77.5
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-36 157.1 198 44.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-32 142.9 184 42.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.8e-31 140.2 187 41.7
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 2.0e-29 134.0 77 79.2
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 4.5e-29 132.9 96 71.9
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.1e-27 128.3 84 69.0
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.6e-26 123.2 166 47.0
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.7e-26 122.9 187 36.9
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.7e-25 119.0 139 44.6
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.3e-24 116.7 159 39.6
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.3e-24 116.7 159 39.6
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.4e-24 115.5 186 36.0
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 2.2e-23 114.0 141 46.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.2e-19 99.8 187 32.6
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 3.3e-16 90.1 180 32.2
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.0e-12 78.6 188 31.4
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 3.0e-09 67.0 58 60.3
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.8e-07 59.7 32 75.0
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 8.3e-07 58.9 69 50.7
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 8.3e-07 58.9 49 55.1
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-06 58.2 92 33.7


User provided reference genes

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