Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 8.5e-171 603.6 307 100.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 5.6e-130 468.0 309 78.3
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.2e-129 466.8 310 76.1
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.0e-128 463.8 314 77.4
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.9e-128 460.7 311 74.6
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 8.9e-128 460.7 313 74.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.5e-127 459.9 316 75.0
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-127 459.9 313 74.4
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 3.4e-127 458.8 316 74.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 9.8e-127 457.2 307 75.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.7e-126 456.4 316 74.7
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.9e-126 455.7 314 75.8
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.9e-126 455.7 314 75.8
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.9e-126 455.7 314 75.8
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.7e-126 455.3 308 75.3
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 6.4e-126 454.5 310 76.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 8.3e-126 454.1 309 76.4
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 8.3e-126 454.1 311 73.3
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.4e-125 452.6 320 73.1
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.2e-125 452.2 311 75.9
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 4.1e-125 451.8 312 75.3
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.1e-125 451.8 310 75.8
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.4e-125 451.4 313 75.7
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.2e-125 450.7 310 75.8
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 9.2e-125 450.7 310 75.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.0e-124 449.5 316 72.8
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.5e-124 448.7 311 74.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.6e-124 448.4 311 74.0
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 6.0e-124 448.0 316 73.4
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 7.8e-124 447.6 310 73.2
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.8e-124 447.6 310 71.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.8e-124 447.6 311 74.6
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.3e-123 446.8 309 76.4
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.7e-123 446.4 309 75.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.3e-123 446.0 311 74.0
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.5e-122 443.4 311 74.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.5e-122 443.4 308 73.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.3e-122 442.2 311 72.0
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 3.3e-122 442.2 309 72.2
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 3.3e-122 442.2 309 72.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.3e-122 441.0 311 71.7
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.2e-121 440.3 311 72.7
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-121 440.3 311 72.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.1e-121 439.5 308 74.4
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.8e-121 439.1 310 73.5
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.8e-121 439.1 315 70.8
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.6e-121 438.7 349 68.5
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 6.2e-121 438.0 320 71.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.4e-120 436.8 311 74.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.8e-120 436.4 307 74.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 5.2e-120 434.9 314 70.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-119 433.3 308 73.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.6e-119 432.6 309 71.2
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.4e-119 432.2 312 71.2
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 4.4e-119 431.8 312 71.2
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.4e-119 431.8 310 73.5
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.8e-119 431.4 314 70.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.5e-119 431.0 310 73.5
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.8e-119 430.6 307 73.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.9e-118 429.1 307 72.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 3.7e-118 428.7 315 68.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 6.4e-118 427.9 309 69.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.3e-118 427.6 311 71.1
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.1e-117 427.2 317 70.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.4e-117 426.8 307 72.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.9e-117 426.4 309 72.2
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.9e-117 426.4 311 70.4
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 7.1e-117 424.5 248 86.7
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.6e-116 423.3 315 67.9
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.0e-115 419.1 314 67.2
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.5e-114 416.0 346 64.5
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 2.5e-114 416.0 311 70.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.5e-114 416.0 314 66.6
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.3e-114 415.6 312 70.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.3e-114 415.6 313 70.6
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.2e-113 413.7 309 71.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.2e-113 413.7 309 71.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.6e-113 413.3 310 70.6
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 2.1e-113 412.9 315 69.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.8e-113 412.5 310 70.6
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.8e-113 412.5 308 70.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 6.2e-113 411.4 309 69.3
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.1e-113 411.0 314 70.1
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-112 410.2 307 71.0
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.4e-112 410.2 307 71.0
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.4e-112 410.2 307 71.0
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.1e-112 409.1 307 70.0
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 3.1e-112 409.1 290 71.4
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 4.0e-112 408.7 309 67.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 6.8e-112 407.9 307 70.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 2.0e-111 406.4 313 69.0
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.6e-111 406.0 309 69.3
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 4.4e-111 405.2 311 66.9
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 4.4e-111 405.2 317 66.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 5.8e-111 404.8 307 68.1
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.0e-107 394.0 310 67.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.2e-105 384.8 221 86.0
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.4e-104 382.9 283 70.3
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 8.9e-104 380.9 333 63.4
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.5e-103 380.2 267 75.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 4.2e-101 372.1 353 58.6
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.7e-100 369.4 343 58.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 4.6e-100 368.6 338 60.4
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 4.3e-98 362.1 246 74.0
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.6e-97 359.0 249 75.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.6e-95 351.3 247 73.3
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.4e-94 347.8 309 64.7
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 9.3e-93 344.4 203 83.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.6e-92 343.6 310 58.7
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.7e-91 340.1 211 81.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.0e-91 339.3 318 58.2
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.6e-91 338.2 266 65.4
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.3e-86 323.9 309 57.6
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 8.4e-86 321.2 310 58.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 7.1e-85 318.2 307 56.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 7.9e-84 314.7 280 60.4
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 7.6e-79 298.1 185 80.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.4e-71 272.7 206 70.9
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.5e-69 265.4 299 52.5
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.3e-66 256.1 245 61.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.6e-65 253.8 380 44.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.2e-65 253.4 412 42.2
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.6e-60 235.7 192 71.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.8e-51 207.2 308 46.1
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.5e-50 204.1 117 89.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-49 201.1 189 56.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.0e-46 191.4 224 46.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.4e-43 181.0 192 54.2
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.3e-42 176.4 220 45.9
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.3e-38 164.5 120 67.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-38 164.1 95 86.3
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.2e-37 159.8 246 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 5.5e-37 159.1 199 45.7
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-35 154.5 96 83.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.3e-35 153.7 122 68.0
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.8e-35 151.8 93 86.0
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-34 151.0 126 61.9
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-34 151.0 126 61.9
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 5.9e-31 139.0 190 44.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.1e-28 129.0 80 81.2
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.8e-27 127.5 138 51.4
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 4.4e-26 122.9 231 38.5
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.4e-24 115.9 99 64.6
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.5e-23 113.2 98 61.2
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 8.9e-19 98.6 63 79.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.9e-09 66.2 40 72.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 6.4e-09 65.9 128 38.3
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.1e-08 63.2 42 66.7
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.5e-07 60.1 43 62.8
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.6e-07 59.7 62 56.5


User provided reference genes

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