Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.4e-237 825.9 423 100.0
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.4e-203 713.0 413 87.2
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.7e-201 704.9 413 86.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 5.9e-199 697.6 413 86.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.3e-198 695.7 413 85.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.1e-197 693.3 413 85.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.1e-197 693.3 413 85.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.5e-197 693.0 413 86.2
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.5e-197 692.2 413 85.5
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 4.7e-196 688.0 413 84.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.7e-196 688.0 413 84.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.1e-195 686.8 413 84.0
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.1e-195 686.8 413 84.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.3e-195 685.6 408 85.5
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 3.1e-195 685.3 415 84.6
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 4.0e-195 684.9 413 84.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 6.8e-195 684.1 413 83.8
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.2e-194 683.3 408 85.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.2e-194 683.3 409 83.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 4.4e-194 681.4 413 83.5
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.3e-193 679.9 410 84.4
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.7e-193 679.5 413 83.5
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.2e-193 679.1 413 84.0
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-192 676.4 413 83.3
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.9e-192 676.0 413 83.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.4e-192 675.6 413 83.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.2e-192 675.2 413 82.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.4e-192 674.5 413 83.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 9.2e-192 673.7 413 82.8
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 6.0e-191 671.0 413 82.8
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 7.8e-191 670.6 412 82.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.3e-190 669.8 444 78.2
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.0e-190 668.7 413 81.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 8.6e-190 667.2 410 82.4
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.5e-189 665.6 409 81.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.8e-188 662.1 408 83.1
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.7e-188 661.4 410 82.4
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 4.7e-188 661.4 413 81.8
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-187 659.4 413 80.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.8e-187 657.5 412 80.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.2e-186 656.8 409 81.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 80.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.4e-186 654.8 412 80.1
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.3e-185 653.3 413 80.1
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.2e-185 652.5 412 79.4
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.7e-185 651.7 413 80.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.7e-185 651.7 414 80.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 4.9e-185 651.4 408 80.1
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.9e-185 651.4 413 79.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 6.4e-185 651.0 412 80.1
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 6.4e-185 651.0 412 79.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 8.3e-185 650.6 413 80.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.1e-184 650.2 413 78.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-184 649.8 413 79.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.4e-184 649.8 413 79.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.4e-184 649.8 415 80.2
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.4e-184 649.8 413 79.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 79.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.1e-184 648.3 412 80.6
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 5.4e-184 647.9 408 79.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 7.1e-184 647.5 413 79.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.1e-184 647.5 408 79.7
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.2e-183 646.7 413 79.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-183 645.6 413 79.9
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.7e-183 645.6 419 78.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 6.0e-183 644.4 413 79.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 7.8e-183 644.0 412 78.6
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.7e-182 642.9 410 79.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.3e-182 642.5 413 79.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.0e-182 642.1 419 78.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.0e-182 642.1 412 79.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.9e-182 641.7 406 80.5
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 5.1e-182 641.3 413 78.9
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.6e-182 641.0 409 80.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.1e-180 636.0 425 77.6
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.1e-180 636.0 425 77.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.6e-180 635.2 425 77.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 6.8e-179 630.9 413 77.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-178 630.2 436 75.2
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.5e-178 629.8 414 77.8
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 5.8e-178 627.9 413 77.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.4e-176 623.2 371 85.7
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.1e-176 621.7 375 84.5
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 3.9e-174 615.1 410 76.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.1e-173 613.6 413 76.8
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 3.3e-173 612.1 410 76.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 6.2e-172 607.8 413 76.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 6.2e-172 607.8 424 74.3
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.8e-170 601.3 410 73.4
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-169 599.0 415 75.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-168 597.0 415 74.9
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.9e-168 596.3 412 71.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.0e-166 589.0 407 74.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.5e-165 586.6 425 72.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.8e-163 579.7 371 80.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.9e-158 562.0 413 70.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 8.7e-158 560.8 408 67.9
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.9e-153 545.0 417 69.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 8.4e-153 544.3 409 66.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.3e-150 537.0 484 63.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.8e-150 536.6 318 85.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.3e-149 532.3 406 70.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.1e-144 517.3 400 64.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.5e-143 512.3 402 62.4
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.8e-139 500.0 413 61.3
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.4e-139 499.6 296 84.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.6e-135 486.9 305 80.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.7e-132 475.7 280 86.4
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-131 474.2 280 86.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.5e-120 436.4 254 86.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.6e-114 417.2 314 69.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.5e-113 411.4 285 71.9
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.3e-110 403.3 254 77.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 9.7e-109 397.9 313 67.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.7e-100 369.4 284 68.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.3e-96 356.3 404 47.8
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-93 347.8 291 67.4
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.4e-85 319.7 200 81.5
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.2e-79 298.9 205 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 5.8e-77 292.4 184 77.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.8e-74 282.0 236 64.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.4e-70 271.2 173 79.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.5e-69 265.4 201 68.2
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 6.8e-62 242.3 403 36.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.9e-62 241.9 204 65.7
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 7.6e-61 238.8 220 60.5
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.6e-55 221.1 321 37.4
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.1e-55 220.7 399 33.3
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.9e-52 210.3 138 77.5
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.5e-50 203.4 121 78.5
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-50 203.0 199 60.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-47 192.2 126 77.8
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-44 184.1 161 63.4
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 5.4e-43 179.5 102 83.3
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.1e-43 179.1 177 56.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 6.9e-38 162.5 411 31.6
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.9e-36 156.4 114 69.3
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-35 154.1 83 88.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.5e-35 152.9 107 65.4
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.3e-28 131.7 80 80.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-25 121.7 117 60.7
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 9.4e-19 99.0 154 40.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.0e-17 94.0 127 52.0
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 8.8e-17 92.4 143 46.9
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 8.8e-17 92.4 101 55.4
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 8.2e-15 85.9 146 45.2
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.2e-15 85.9 50 82.0
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 6.9e-14 82.8 54 83.3
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-11 74.3 55 70.9
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-10 72.0 71 57.7
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-09 68.2 62 62.9
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-09 67.8 50 68.0
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.3e-08 63.9 38 81.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.8e-07 60.8 45 68.9


User provided reference genes

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