Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.1e-191 672.2 327 100.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 9.7e-141 503.8 305 80.0
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.8e-137 491.9 334 73.4
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 6.5e-137 491.1 333 74.8
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.9e-136 489.6 284 83.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.2e-136 488.4 325 76.6
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 7.2e-136 487.6 330 75.2
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 8.0e-135 484.2 280 83.9
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.3e-134 482.6 285 80.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 3.0e-134 482.3 321 74.5
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 6.8e-134 481.1 310 75.8
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.8e-134 480.7 285 80.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 8.8e-134 480.7 307 76.5
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.5e-133 479.9 338 72.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.5e-133 479.9 279 83.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 2.6e-133 479.2 280 83.2
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 5.7e-133 478.0 339 72.0
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-132 476.9 292 80.5
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.3e-132 476.9 292 80.5
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.8e-132 475.7 324 74.1
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.8e-132 475.7 331 72.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.8e-132 474.9 279 82.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-131 473.4 288 80.6
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.4e-131 473.4 288 80.6
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.4e-131 472.6 321 75.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.1e-131 472.2 288 80.9
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.1e-131 472.2 327 73.4
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.4e-131 471.5 333 71.8
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 7.0e-131 471.1 335 71.0
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.6e-130 469.9 331 72.8
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.5e-130 468.8 333 72.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 5.9e-130 468.0 325 73.2
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 7.7e-130 467.6 301 77.4
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.9e-129 465.7 293 76.8
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 6.6e-129 464.5 332 70.2
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.5e-128 463.4 335 69.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 7.2e-128 461.1 326 72.4
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 7.2e-128 461.1 328 69.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.6e-127 459.9 328 70.1
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.6e-127 458.8 343 69.4
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.1e-127 458.0 330 70.0
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 6.1e-127 458.0 300 74.7
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 8.0e-127 457.6 337 69.4
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.8e-126 456.4 331 71.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 2.3e-126 456.1 331 70.7
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.0e-126 455.7 323 71.2
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 7.5e-125 451.1 290 76.6
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 2.8e-124 449.1 279 79.6
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 2.8e-124 449.1 332 69.6
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 3.7e-124 448.7 329 69.9
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.0e-122 443.0 287 75.6
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 5.9e-122 441.4 334 67.7
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 7.8e-122 441.0 314 70.1
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.0e-121 440.7 255 82.0
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.9e-121 439.1 323 70.6
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.9e-121 438.7 309 70.9
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-120 436.8 302 73.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.9e-120 436.4 337 67.1
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.6e-119 433.3 319 70.2
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.1e-119 433.0 290 75.5
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.1e-119 433.0 303 71.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.8e-119 432.6 325 68.0
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 2.8e-119 432.6 277 76.2
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 4.7e-119 431.8 271 76.4
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 325 68.0
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.4e-118 430.3 220 91.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 6.8e-118 427.9 337 68.0
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.2e-117 427.2 318 69.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.5e-117 426.8 226 89.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 4.4e-117 425.2 345 65.5
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.3e-116 423.7 275 75.6
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 4.9e-116 421.8 325 65.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.2e-115 417.5 254 78.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.7e-114 416.0 281 75.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.7e-114 416.0 229 85.2
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 7.8e-114 414.5 229 85.2
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.3e-113 413.7 246 80.9
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.6e-111 405.6 325 66.8
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 5.2e-110 401.7 309 67.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.8e-110 401.4 228 82.5
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 2.0e-109 399.8 279 70.6
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 2.2e-108 396.4 336 62.2
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.0e-105 387.5 344 62.5
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.3e-104 382.5 206 87.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 9.5e-104 380.9 339 61.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.8e-102 376.7 334 60.8
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 7.1e-99 364.8 210 84.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.9e-97 359.0 296 64.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.8e-94 348.2 333 58.0
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 8.9e-94 347.8 324 59.3
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.0e-93 346.7 265 67.9
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.4e-92 341.7 235 69.8
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 8.4e-92 341.3 236 69.5
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.1e-90 336.7 469 43.9
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 4.6e-90 335.5 348 52.6
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.9e-88 330.1 258 62.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.2e-85 320.9 206 77.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 3.8e-84 315.8 262 64.9
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.1e-78 297.7 249 56.6
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.2e-75 285.8 260 53.8
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 5.4e-75 285.4 167 80.8
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 6.0e-74 282.0 220 65.9
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.7e-68 263.8 292 49.0
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 6.5e-68 261.9 249 58.2
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.9e-67 260.4 225 60.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-63 247.7 220 57.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.3e-60 237.7 205 54.1
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.2e-59 232.6 214 57.5
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.1e-56 224.6 120 84.2
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.9e-56 223.8 244 52.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.3e-55 221.1 185 65.9
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.4e-48 195.3 162 66.0
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.0e-41 173.3 97 81.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.9e-37 159.1 109 72.5
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.8e-31 140.2 341 28.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.7e-29 132.1 155 45.8
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.2e-28 130.6 62 96.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.1e-22 110.2 104 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 7.7e-21 105.5 132 46.2
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-14 85.1 42 95.2
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.5e-11 72.0 160 37.5
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.0e-08 64.3 68 48.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.0e-08 64.3 68 48.5
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.7e-07 61.2 56 57.1
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 9.2e-06 55.5 40 70.0


User provided reference genes

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