Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 0.0e+00 1604.0 805 100.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1122.5 804 70.6
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1102.4 815 68.1
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1096.6 815 68.1
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1093.2 815 68.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1091.6 810 68.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1090.5 812 69.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1089.3 816 68.4
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1080.9 816 68.5
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1076.2 813 67.8
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1075.8 816 67.9
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 6.6e-311 1070.5 809 68.2
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 9.6e-307 1056.6 821 65.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.8e-305 1052.4 812 66.9
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.1e-305 1051.6 815 66.1
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 2.6e-304 1048.5 810 66.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 7.6e-304 1047.0 813 65.7
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.3e-303 1046.2 818 65.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 8.4e-303 1043.5 817 65.5
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 1.4e-302 1042.7 813 66.8
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.4e-302 1042.7 812 65.1
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 6.0e-301 1037.3 812 65.8
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 6.0e-301 1037.3 814 66.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.9e-299 1032.3 812 66.4
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.3e-299 1031.6 812 66.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.4e-297 1026.2 834 63.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.5e-296 1021.1 812 65.8
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 7.1e-294 1013.8 792 65.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 3.9e-292 1008.1 807 63.8
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.1e-290 1002.3 810 64.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 6.9e-289 997.3 815 62.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 3.8e-287 991.5 802 64.2
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 6.5e-287 990.7 816 64.1
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.2e-286 988.0 828 61.6
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.8e-284 982.6 786 63.5
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.0e-284 981.9 813 63.1
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.0e-284 981.9 802 63.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-283 979.9 822 61.6
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 4.3e-283 978.0 813 63.0
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.3e-282 976.5 813 61.7
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 4.8e-282 974.5 799 61.7
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.4e-281 973.0 827 62.6
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.8e-281 972.6 839 60.3
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.4e-281 972.2 876 59.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.4e-281 972.2 807 63.6
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 9.0e-281 970.3 734 67.3
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.6e-280 968.8 815 62.3
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 2.6e-280 968.8 806 62.3
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.9e-279 965.3 789 63.6
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 3.8e-279 964.9 828 62.1
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 8.5e-279 963.8 818 61.6
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.4e-278 963.0 820 61.0
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.4e-276 956.4 812 61.7
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 3.3e-275 951.8 783 63.3
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 9.7e-275 950.3 819 60.8
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.7e-274 949.5 797 62.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.7e-274 948.3 787 61.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 4.8e-274 948.0 820 60.1
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 4.8e-274 948.0 838 59.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 6.3e-274 947.6 827 59.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 2.0e-272 942.6 816 59.2
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.3e-271 939.9 784 62.8
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.7e-271 939.5 820 60.7
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.7e-271 939.5 810 60.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 2.9e-271 938.7 819 58.2
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 8.5e-271 937.2 816 58.8
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 8.5e-271 937.2 816 58.9
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 5.5e-270 934.5 789 60.6
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 9.4e-270 933.7 832 58.5
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.0e-268 930.2 815 57.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 3.0e-268 928.7 816 58.7
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.3e-266 923.3 819 59.1
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 3.7e-266 921.8 841 56.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 7.0e-265 917.5 820 59.9
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 7.0e-265 917.5 741 64.6
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.0e-265 917.5 816 57.2
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.7e-263 912.9 791 61.7
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 5.5e-262 907.9 815 57.4
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-261 906.7 818 58.7
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 2.8e-250 869.0 817 57.8
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.0e-248 862.8 812 55.7
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 6.5e-247 857.8 813 56.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 8.5e-247 857.4 873 52.2
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.7e-245 851.7 777 57.4
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.3e-242 841.3 850 55.6
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 5.4e-241 838.2 827 55.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.3e-230 802.0 619 66.4
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.9e-228 794.3 623 67.6
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.9e-228 794.3 623 67.6
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 7.3e-222 774.6 765 53.9
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.1e-221 771.2 633 65.6
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.2e-218 763.1 598 65.1
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.4e-212 743.8 612 64.1
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 4.4e-203 712.2 627 58.9
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 5.4e-201 705.3 721 52.3
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 3.2e-193 679.5 799 47.9
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 5.1e-191 672.2 792 47.5
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.8e-181 639.0 805 44.2
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 4.0e-180 636.0 720 47.8
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.3e-165 587.8 549 56.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.6e-155 553.5 402 67.4
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.8e-146 523.1 482 59.8
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.1e-145 521.5 548 51.3
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.4e-140 503.8 470 54.7
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.0e-138 498.4 399 66.7
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 4.1e-132 476.5 331 68.3
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 3.5e-131 473.4 770 38.2
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.8e-127 459.1 342 66.1
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-124 451.4 340 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.6e-120 436.8 777 38.5
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.3e-117 425.6 396 59.8
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.7e-114 417.9 705 38.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.8e-96 357.5 453 44.6
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.4e-92 344.4 484 45.2
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 6.2e-88 329.7 242 65.3
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.1e-88 329.3 284 63.0
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 9.0e-79 299.3 301 53.2
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 5.6e-73 280.0 850 28.6
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.1e-71 274.2 183 68.9
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-70 271.9 305 47.9
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.0e-70 271.6 355 45.1
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.0e-66 257.7 382 46.1
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-64 251.1 189 64.0
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.4e-55 221.5 229 47.6
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 7.7e-54 216.5 174 63.8
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 6.5e-53 213.4 144 68.8
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.8e-47 195.3 229 55.0
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.5e-44 184.9 158 58.2
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.8e-42 176.4 148 58.8
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-41 175.6 165 57.0
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.8e-39 168.7 165 54.5
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.0e-37 162.9 216 42.1
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.4e-36 156.4 206 43.7
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 3.6e-27 127.9 153 50.3
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-20 105.9 105 46.7
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.3e-16 92.8 878 21.4
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 6.1e-11 73.9 363 23.7
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.5e-09 69.3 73 50.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.6e-09 68.6 43 72.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 4.1e-07 61.2 91 40.7
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 5.9e-06 57.4 36 72.2


User provided reference genes

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