Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 3577.7 1972 100.0
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 3146.3 1763 94.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2309.6 1792 70.4
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2294.6 1823 68.5
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2285.0 1790 70.1
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2273.4 1827 68.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2258.0 1834 68.0
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2257.3 1849 67.9
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2255.3 1823 68.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2254.2 1795 69.2
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2251.5 1823 68.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2248.8 1824 68.4
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2246.1 1795 68.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2244.9 1817 67.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2239.9 1817 67.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2238.8 1805 69.0
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2229.9 1791 68.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2226.4 1795 67.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2221.0 1790 68.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2219.9 1816 67.2
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2219.1 1810 67.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2218.4 1795 67.9
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2218.0 1810 67.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2214.9 1806 67.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2212.2 1827 66.7
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2212.2 1815 66.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2210.6 1755 68.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2203.3 1827 66.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2202.9 1830 66.7
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2195.2 1792 68.0
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2192.2 1822 66.9
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2189.5 1829 66.1
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2186.4 1789 66.7
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2184.8 1792 66.7
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2182.5 1789 66.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2181.0 1849 65.3
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2163.7 1921 63.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2154.8 1758 67.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2147.1 1854 65.2
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2146.3 1831 65.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2144.8 1817 65.2
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2139.8 1800 65.4
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2138.2 1824 64.0
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2131.3 1818 66.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2130.9 1805 65.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2127.1 1800 65.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2114.7 1809 64.6
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2113.2 1806 65.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2087.4 1804 64.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2084.7 1819 64.2
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2083.5 1786 64.5
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2070.8 1813 63.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2068.9 1827 62.6
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2068.9 1825 62.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2068.5 1829 62.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2067.4 1812 63.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2056.2 1817 62.2
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2054.6 1831 63.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2052.7 1810 63.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2052.3 1773 64.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2043.1 1812 62.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2035.0 1793 63.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2034.2 1827 62.7
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2034.2 1780 64.3
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2018.8 1760 64.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2014.6 1833 61.6
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2010.7 1797 63.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2010.3 1801 62.4
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2009.2 1803 62.3
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1995.3 1823 62.6
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1992.6 1775 63.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1986.5 1790 61.8
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1981.8 1772 63.1
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1978.8 1815 61.7
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1973.0 1840 60.3
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1972.6 1832 61.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1971.4 1786 61.9
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1829 60.2
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1917.1 1780 61.5
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1899.8 1807 59.7
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1894.4 1817 59.4
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1875.1 1675 62.9
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1860.1 1784 59.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1845.5 1854 58.4
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1842.8 1850 57.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1822.8 1830 57.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1821.6 1821 57.1
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1819.7 1811 57.8
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1830 56.8
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1812.0 1852 56.3
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1811.6 1826 56.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1808.1 1823 56.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1805.4 1835 56.2
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1803.9 1827 56.8
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1787.7 1816 56.8
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1776.9 1832 55.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1771.1 1823 56.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1761.1 1831 56.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1760.0 1685 60.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1836 55.3
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1836 55.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1754.6 1821 55.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1752.3 1833 54.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1750.7 1836 55.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1691.0 1852 54.2
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1611.3 1236 71.1
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1590.1 1828 51.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1548.5 1827 50.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1463.7 1937 47.8
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1454.9 1882 48.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1454.9 1882 48.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1433.7 1231 66.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1424.5 1340 59.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1417.5 1839 48.3
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1389.0 1821 47.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1383.6 1479 57.3
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1360.1 1820 47.9
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1358.6 1218 64.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1261.9 1462 53.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1211.8 1760 44.8
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1204.1 995 65.9
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1086.6 1311 53.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1084.3 922 65.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-308 1063.1 922 63.6
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.5e-276 957.6 1828 38.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.0e-274 949.5 871 62.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.4e-271 941.0 1408 47.0
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.2e-270 937.9 744 66.8
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-256 891.3 1772 36.7
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.5e-248 862.4 786 62.1
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.6e-241 840.5 826 57.4
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.1e-184 650.2 494 66.8
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.9e-178 631.7 654 56.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.5e-175 621.3 656 54.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.6e-174 618.6 715 51.2
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.4e-162 578.9 610 55.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.2e-162 577.4 497 61.6
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.1e-153 547.0 339 76.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.7e-137 494.2 431 60.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.1e-129 467.2 431 56.8
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.5e-119 436.0 422 58.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-113 416.4 1218 29.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.4e-109 402.1 436 54.8
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-79 303.5 655 35.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.0e-79 302.8 833 34.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.6e-76 293.1 2066 22.5
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.3e-74 284.3 470 39.1
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 4.4e-71 275.0 418 42.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 6.2e-65 254.6 161 78.9
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.3e-64 251.5 224 64.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.3e-58 232.3 392 40.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.1e-56 227.3 197 66.0
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.5e-47 196.8 259 45.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.0e-43 182.6 230 54.8
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.8e-32 146.7 77 90.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.2e-19 102.1 161 46.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.0e-14 87.8 52 69.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.9e-14 86.3 58 70.7
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 3.2e-13 82.8 152 37.5
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.1e-12 80.1 75 52.0
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.8e-11 77.0 65 58.5
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.0e-10 73.6 94 47.9
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.8e-09 68.9 49 63.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.4e-08 67.4 33 84.8
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 7.7e-07 61.6 43 65.1


User provided reference genes

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