Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 3498.8 1902 100.0
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 3148.6 1763 94.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2384.0 1937 69.8
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2354.3 1911 70.5
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2339.3 1932 69.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2332.8 1898 69.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2328.1 1908 70.4
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2327.0 1915 69.7
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2313.9 1971 67.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2311.6 1932 68.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2308.1 1937 67.7
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2307.3 1948 68.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2306.2 1924 68.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2305.0 1924 68.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2303.1 1919 68.4
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2295.0 1946 68.1
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2294.6 1964 67.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2288.1 1906 69.7
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2285.0 1909 69.4
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2282.3 1929 68.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2280.4 1907 68.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2273.0 1930 67.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2269.6 1856 68.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2267.3 1867 69.2
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2263.0 2000 65.7
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1949 66.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2257.3 1939 67.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2249.6 1910 67.1
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2249.2 1913 67.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2247.6 1937 66.8
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2245.7 1913 67.9
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2244.9 1910 67.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2241.1 1814 68.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2240.3 1792 68.5
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2228.4 1946 66.0
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2221.0 2035 64.0
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2217.6 1907 67.5
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2204.9 1969 65.2
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2201.8 1935 64.5
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2201.0 1829 66.3
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2187.5 1919 65.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2186.8 1916 66.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2181.4 1918 65.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2180.2 1978 64.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2179.8 1923 66.4
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2167.1 1930 65.4
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2166.7 1937 65.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2158.3 1890 65.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2154.8 1758 67.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2139.0 1935 63.8
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2134.0 1916 64.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2126.3 1838 66.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2124.7 1942 62.8
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1904 64.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2117.0 1934 63.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2108.2 1927 63.5
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2105.5 1907 64.8
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2100.9 1950 63.5
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2097.8 1903 64.2
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2093.5 1789 64.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2092.4 1906 64.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2086.2 1918 62.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2085.8 1934 64.6
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1922 62.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2062.3 1908 63.5
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2061.6 1941 62.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2047.3 1868 64.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2045.0 1776 64.1
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2043.9 1797 64.9
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2028.8 1962 62.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2024.2 1803 62.6
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2021.5 1887 63.2
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2019.6 1901 62.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1998.4 1834 61.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1996.9 1949 59.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1992.6 1883 62.9
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1981.1 1785 62.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1966.8 1892 60.9
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1946.8 1896 61.3
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1921.4 1822 60.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1919.1 1811 60.2
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1910.2 1675 63.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1904.8 1981 58.6
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1864.7 1827 59.1
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1864.0 1905 58.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1852.8 1855 57.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1845.9 1899 59.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1839.3 1831 57.5
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1836.2 1824 57.7
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1836.2 1867 57.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1833.2 1857 56.9
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1823 58.5
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1830.8 1831 57.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1827.0 1831 57.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1818.9 1944 55.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1812.3 1864 58.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1798.5 1968 56.6
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1794.2 1835 56.2
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1791.2 1831 57.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1784.6 1844 56.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1783.8 1844 56.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1783.8 1844 56.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1782.3 1843 56.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1761.5 1687 60.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1684.1 1855 54.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1656.0 1236 72.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1622.8 1943 51.3
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1574.3 1833 51.0
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1473.4 1942 48.1
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1465.7 1888 48.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1465.7 1888 48.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1456.4 1351 60.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1448.3 1232 68.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1439.5 1845 49.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1397.1 1931 47.9
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1389.4 1488 57.5
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1374.4 1218 66.0
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1345.5 1941 47.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1283.9 1457 55.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1231.1 1088 65.9
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1208.4 1763 44.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1093.2 922 65.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1091.3 1333 53.5
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1090.1 1031 62.6
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 9.3e-284 981.5 842 66.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 5.6e-281 972.2 1743 41.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.2e-277 960.3 865 62.9
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.1e-267 927.2 1408 46.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.2e-256 888.6 1788 36.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.0e-242 843.6 786 61.2
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.8e-240 837.0 868 54.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-200 704.1 608 66.4
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.9e-186 656.0 652 56.7
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 6.4e-184 649.8 647 54.7
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 4.3e-180 637.1 715 52.4
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.6e-166 592.0 497 62.4
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.8e-163 581.3 454 71.8
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.4e-162 578.2 607 55.2
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.7e-149 533.5 548 59.5
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.4e-140 503.4 556 55.0
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-116 426.4 1214 29.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.4e-116 424.5 352 63.9
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 7.7e-113 413.7 436 55.5
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.4e-82 313.2 830 34.1
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.9e-82 312.8 629 35.9
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.3e-77 295.8 2066 22.3
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.3e-77 295.8 470 40.4
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.7e-72 279.6 420 43.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.6e-70 273.1 276 68.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-62 246.1 218 64.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.3e-58 230.7 396 39.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.5e-55 222.6 191 66.0
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 9.9e-52 210.7 259 47.1
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.4e-50 206.8 192 78.1
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.3e-40 172.9 230 53.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.2e-19 103.2 161 46.6
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 3.0e-16 92.8 133 63.2
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.6e-15 89.7 52 71.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 5.7e-15 88.6 58 72.4
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 2.2e-14 86.7 152 37.5
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.8e-14 86.3 77 57.1
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.9e-11 76.3 59 62.7
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.6e-09 69.3 33 87.9
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.7e-09 68.9 49 63.3
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 6.7e-08 65.1 87 46.0
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 1.5e-07 63.9 43 69.8


User provided reference genes

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