Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.0e-227 793.1 423 100.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.2e-188 663.3 419 80.4
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.6e-188 662.9 419 80.7
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 6.2e-188 661.0 361 88.4
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.1e-187 660.2 420 79.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.4e-187 659.8 359 88.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.4e-187 659.8 419 79.5
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.0e-186 656.0 361 88.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 3.4e-186 655.2 419 80.9
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 4.4e-186 654.8 365 86.6
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 5.8e-186 654.4 420 80.2
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.9e-185 652.1 423 78.3
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 2.9e-185 652.1 361 86.7
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 6.4e-185 651.0 362 87.0
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 8.3e-185 650.6 365 87.7
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 9.2e-184 647.1 360 87.5
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.2e-183 646.7 365 84.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.1e-183 646.0 365 85.5
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 6.0e-183 644.4 360 86.9
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 7.8e-183 644.0 360 86.1
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 7.8e-183 644.0 360 86.7
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.7e-182 642.9 362 85.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 3.0e-182 642.1 421 76.2
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 8.6e-182 640.6 360 86.4
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 1.1e-181 640.2 360 86.1
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.9e-181 639.4 460 73.0
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 3.3e-181 638.6 362 84.5
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 7.3e-181 637.5 362 86.2
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 7.3e-181 637.5 384 81.8
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.6e-180 636.3 367 83.7
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.1e-180 636.0 359 84.7
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 3.6e-180 635.2 359 85.5
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 4.7e-180 634.8 362 84.3
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 8.1e-180 634.0 384 81.5
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.4e-179 633.3 365 84.4
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.8e-179 632.9 359 84.4
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 5.2e-179 631.3 381 81.1
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 6.8e-179 630.9 359 83.8
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 6.8e-179 630.9 359 85.8
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.2e-178 630.2 361 83.9
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.2e-178 630.2 362 83.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-178 629.8 361 83.7
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.0e-178 629.4 363 82.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.0e-178 629.4 359 85.5
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.6e-178 629.0 361 83.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 4.9e-177 624.8 423 73.3
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 4.9e-177 624.8 431 74.5
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.1e-176 623.6 361 82.8
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.4e-176 622.5 362 81.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.0e-174 617.1 383 79.1
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 3.9e-174 615.1 343 86.9
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 5.1e-174 614.8 360 84.7
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.9e-173 612.8 360 81.4
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.5e-173 612.5 403 76.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.3e-173 612.1 361 83.1
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 9.6e-173 610.5 461 68.8
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.2e-172 610.1 362 81.8
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.6e-172 609.8 362 81.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.6e-172 608.6 360 81.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 4.7e-172 608.2 362 81.2
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 4.7e-172 608.2 362 81.2
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 4.7e-172 608.2 362 81.2
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.1e-171 607.1 360 80.6
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.4e-171 606.7 370 80.8
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.4e-171 605.9 425 80.7
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.1e-171 605.5 377 79.0
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.2e-170 603.6 420 72.9
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.5e-170 603.2 364 81.0
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 2.6e-170 602.4 360 83.3
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.4e-170 602.1 359 84.1
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.4e-170 602.1 365 81.1
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 9.9e-170 600.5 366 80.1
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 9.9e-170 600.5 361 82.0
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 6.4e-169 597.8 361 79.5
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 2.4e-168 595.9 362 80.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 4.2e-168 595.1 366 80.9
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 6.0e-167 591.3 342 85.1
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 1.0e-166 590.5 359 79.9
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.0e-166 590.5 359 80.5
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.0e-166 590.5 342 83.6
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 6.6e-166 587.8 361 79.2
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 8.7e-166 587.4 358 79.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 3.3e-165 585.5 421 71.3
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 9.6e-165 583.9 359 79.7
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.6e-164 582.0 422 71.1
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 3.6e-164 582.0 360 79.2
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.4e-163 580.1 328 82.6
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 9.0e-163 577.4 364 78.0
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.5e-162 575.1 325 84.9
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.5e-162 575.1 325 84.9
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 4.5e-162 575.1 402 72.6
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 2.2e-161 572.8 360 77.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 7.1e-160 567.8 448 67.0
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 9.3e-160 567.4 359 74.7
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.6e-159 566.6 362 76.8
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 4.6e-159 565.1 362 76.2
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 5.1e-158 561.6 362 75.1
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.3e-157 558.9 364 76.9
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 5.6e-157 558.1 339 79.6
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.2e-154 550.4 339 79.4
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.6e-151 538.5 451 61.2
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.8e-150 536.6 567 52.6
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 8.7e-150 534.3 361 70.6
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.9e-147 524.6 599 50.4
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.8e-146 521.5 361 71.2
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.8e-142 510.0 361 70.4
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 6.9e-139 498.0 366 69.7
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 8.2e-132 474.6 487 53.4
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 6.1e-119 431.8 336 64.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.3e-116 424.1 347 58.8
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-115 420.6 448 53.6
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.6e-111 407.1 209 90.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 2.7e-111 406.4 203 95.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 2.2e-108 396.7 364 53.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.4e-107 394.0 364 54.9
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 3.7e-76 289.7 292 50.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 9.9e-61 238.4 355 38.9
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.0e-57 226.9 122 85.2
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 3.9e-57 226.5 114 92.1
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 8.7e-49 198.7 181 59.7
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.4e-43 181.4 111 80.2
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.0e-41 175.3 211 51.2
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 9.6e-32 142.1 103 66.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.0e-29 134.4 68 86.8
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.5e-28 129.4 75 84.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.1e-26 124.4 85 71.8
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.3e-25 120.9 83 71.1
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.5e-21 108.2 80 66.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 7.2e-19 99.4 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.8e-14 84.7 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.0e-12 79.0 61 65.6
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 3.2e-11 73.9 43 81.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 7.2e-11 72.8 70 58.6
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 5.1e-09 66.6 38 73.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 2.2e-07 61.2 36 75.0


User provided reference genes

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