Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 1.7e-246 855.5 427 100.0
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 4.9e-217 757.7 427 88.3
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 2.4e-216 755.4 427 88.5
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 7.8e-215 750.4 428 87.4
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.7e-214 749.2 427 87.4
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.1e-213 746.5 427 87.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.9e-213 745.7 428 87.4
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 4.7e-212 741.1 427 86.9
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 6.2e-212 740.7 428 87.6
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 8.1e-212 740.3 427 85.9
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 8.1e-212 740.3 429 86.9
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.1e-211 740.0 429 86.0
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 1.4e-211 739.6 428 87.4
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.8e-211 739.2 430 86.3
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 6.8e-211 737.3 428 86.2
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.5e-210 736.1 433 84.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.0e-210 735.7 429 86.2
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.0e-210 735.7 433 84.5
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.7e-209 732.6 427 85.9
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 4.9e-209 731.1 428 84.8
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 4.9e-209 731.1 427 85.5
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 6.4e-209 730.7 427 84.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.4e-209 730.3 433 84.3
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.4e-208 729.6 433 83.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 2.4e-208 728.8 429 85.1
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 5.4e-208 727.6 427 84.3
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 9.2e-208 726.9 431 86.1
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.2e-207 726.5 431 85.2
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.6e-207 726.1 429 86.0
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.1e-207 725.7 432 85.4
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.5e-207 724.9 427 85.7
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.5e-207 724.9 427 85.7
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.0e-206 723.4 429 83.9
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.7e-206 722.6 427 83.8
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.3e-206 722.2 427 85.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.3e-206 722.2 427 83.6
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 3.0e-206 721.8 435 85.3
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 3.0e-206 721.8 427 84.5
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.9e-206 721.5 428 85.0
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 5.1e-206 721.1 429 83.9
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.1e-206 721.1 427 85.5
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 5.1e-206 721.1 430 85.1
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 8.7e-206 720.3 432 83.8
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.5e-205 719.5 432 84.7
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.5e-205 718.8 430 84.4
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.3e-205 718.4 428 84.8
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 4.3e-205 718.0 428 83.4
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 7.3e-205 717.2 429 83.9
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 4.7e-204 714.5 414 85.5
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 6.2e-204 714.1 395 88.4
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.4e-203 713.0 427 82.9
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.0e-203 711.4 428 82.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 4.0e-203 711.4 428 82.9
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 5.2e-203 711.1 393 88.0
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.2e-202 709.9 436 83.0
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.5e-202 709.5 411 85.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 5.8e-202 707.6 380 91.6
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 9.9e-202 706.8 431 82.8
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.3e-201 706.4 398 87.7
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 4.9e-201 704.5 423 82.7
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 6.4e-201 704.1 426 83.3
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.4e-200 703.0 397 87.2
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.9e-200 702.6 429 83.2
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.9e-200 702.6 431 82.6
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.4e-200 702.2 431 82.4
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 3.2e-200 701.8 416 84.1
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 3.2e-200 701.8 369 93.2
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.6e-199 699.5 397 86.9
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.6e-199 699.5 427 83.4
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.1e-199 699.1 429 82.1
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.1e-199 699.1 413 84.3
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.3e-198 695.7 427 80.3
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 3.0e-198 695.3 433 81.1
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.5e-197 693.0 369 91.9
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 2.5e-197 692.2 428 81.3
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 3.3e-197 691.8 424 80.0
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 5.6e-197 691.0 404 83.4
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 5.6e-197 691.0 422 80.8
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 9.6e-197 690.3 404 83.4
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 2.4e-195 685.6 404 82.9
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 3.1e-195 685.3 399 84.0
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 4.0e-195 684.9 406 82.8
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.6e-194 682.2 406 82.0
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 3.4e-194 681.8 416 81.5
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 4.5e-194 681.4 428 79.9
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 7.6e-194 680.6 406 82.3
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.7e-193 679.5 418 80.9
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 2.9e-193 678.7 411 81.0
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 8.4e-193 677.2 396 86.4
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 8.4e-193 677.2 432 78.5
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 5.4e-192 674.5 430 78.8
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 9.3e-192 673.7 432 78.9
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.2e-191 673.3 431 80.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.6e-191 672.9 435 78.4
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.1e-191 672.5 397 83.4
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.1e-191 672.5 430 79.3
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 4.6e-191 671.4 432 78.7
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 6.0e-191 671.0 407 82.1
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.9e-190 668.3 417 80.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.5e-189 665.6 432 78.2
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.5e-189 665.6 409 80.2
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 5.6e-189 664.5 405 81.0
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 4.0e-187 658.3 410 80.7
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.5e-186 656.4 440 77.7
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 2.6e-186 655.6 468 71.8
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 5.8e-186 654.4 440 77.3
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 6.4e-185 651.0 380 86.1
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.5e-184 647.9 369 86.4
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 7.6e-178 627.5 423 70.7
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 7.6e-178 627.5 376 83.2
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.5e-176 622.5 397 77.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 3.0e-174 615.5 380 78.4
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 9.7e-173 610.5 397 75.3
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.1e-171 605.5 379 77.0
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.0e-158 563.9 395 69.1
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 8.8e-158 560.8 328 82.0
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 2.0e-157 559.7 426 65.0
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 6.3e-156 554.7 382 73.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 4.1e-155 552.0 338 82.0
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.4e-154 548.9 388 71.6
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.8e-150 536.6 370 69.7
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 6.7e-142 508.1 379 63.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 5.9e-138 495.0 289 83.4
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.6e-127 460.3 300 76.7
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 2.1e-127 459.9 442 58.1
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.3e-113 413.3 268 79.5
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 2.1e-106 390.2 281 72.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.6e-71 274.2 359 42.1
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 2.0e-69 267.3 335 42.4
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.0e-65 255.0 185 75.1
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 1.9e-51 207.6 119 84.9
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.8e-46 191.0 113 78.8
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 8.0e-34 149.1 84 83.3
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.2e-31 141.0 84 81.0
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.8e-30 137.9 84 78.6
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 5.0e-28 129.8 126 60.3
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 9.8e-24 115.5 57 89.5
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 6.3e-23 112.8 79 70.9
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.2e-20 104.4 86 66.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.6e-16 90.9 55 81.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 6.3e-15 86.3 196 31.1
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 2.8e-10 70.9 40 80.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 3.0e-09 67.4 66 56.1
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 7.0e-06 56.2 157 30.6


User provided reference genes

Program Settings