Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.3e-131 473.0 231 100.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 1.8e-85 319.7 165 95.2
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 1.7e-83 313.2 165 92.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.1e-82 310.5 165 90.9
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 1.9e-82 309.7 165 90.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 2.5e-82 309.3 165 90.3
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 4.2e-82 308.5 165 90.9
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 4.2e-82 308.5 165 91.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 5.5e-82 308.1 165 90.3
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 5.5e-82 308.1 165 90.3
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 5.5e-82 308.1 165 90.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 7.2e-82 307.8 165 90.3
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 7.2e-82 307.8 165 91.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 9.5e-82 307.4 165 90.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.5e-82 307.4 165 90.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.6e-81 306.6 165 89.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 1.6e-81 306.6 165 90.3
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 2.1e-81 306.2 165 89.7
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 2.8e-81 305.8 165 89.1
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 6.1e-81 304.7 165 89.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 8.0e-81 304.3 165 88.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.0e-81 304.3 165 89.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.0e-81 304.3 165 89.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.4e-80 303.5 159 91.2
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 1.4e-80 303.5 165 88.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 1.8e-80 303.1 165 89.1
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 3.0e-80 302.4 161 91.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.0e-80 302.4 165 89.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 3.0e-80 302.4 165 87.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 5.2e-80 301.6 165 87.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 5.2e-80 301.6 165 87.3
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 5.2e-80 301.6 165 87.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 5.2e-80 301.6 165 87.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 8.9e-80 300.8 165 87.9
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 2.0e-79 299.7 165 88.5
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 2.0e-79 299.7 165 87.3
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.0e-79 299.7 165 86.7
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 2.6e-79 299.3 165 87.3
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 3.4e-79 298.9 165 86.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 3.4e-79 298.9 165 86.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 3.4e-79 298.9 165 86.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 4.4e-79 298.5 165 86.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 4.4e-79 298.5 165 87.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 5.7e-79 298.1 165 87.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 7.5e-79 297.7 165 86.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 9.8e-79 297.4 165 87.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 9.8e-79 297.4 165 87.3
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.3e-78 297.0 182 82.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 1.3e-78 297.0 165 86.7
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 1.7e-78 296.6 165 86.7
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 1.7e-78 296.6 165 86.7
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 2.2e-78 296.2 165 87.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.8e-78 295.8 165 87.3
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 3.7e-78 295.4 169 85.8
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 4.9e-78 295.0 165 86.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 6.3e-78 294.7 165 87.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 6.3e-78 294.7 165 85.5
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 8.3e-78 294.3 165 84.8
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 8.3e-78 294.3 168 85.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 8.3e-78 294.3 165 86.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 1.1e-77 293.9 165 85.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-77 293.9 165 84.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.1e-77 293.9 165 85.5
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 1.4e-77 293.5 165 84.8
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 1.4e-77 293.5 165 84.8
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 1.8e-77 293.1 165 85.5
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 4.1e-77 292.0 165 85.5
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.4e-77 291.6 165 84.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 9.2e-77 290.8 165 84.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 2.7e-76 289.3 165 83.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 5.9e-76 288.1 165 83.6
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 7.8e-76 287.7 165 83.0
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 7.8e-76 287.7 165 83.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 7.8e-76 287.7 165 83.6
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 7.8e-76 287.7 165 84.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 1.0e-75 287.3 165 84.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 3.8e-75 285.4 165 82.4
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-74 283.9 165 82.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.9e-74 283.1 165 83.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-74 282.7 165 81.8
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 2.5e-74 282.7 165 81.8
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 2.5e-74 282.7 165 81.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 5.6e-74 281.6 165 81.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 5.6e-74 281.6 165 81.8
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 7.3e-74 281.2 165 81.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 1.2e-73 280.4 165 81.8
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 1.6e-73 280.0 165 81.8
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 3.6e-73 278.9 165 81.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 3.6e-73 278.9 165 81.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 6.1e-73 278.1 181 76.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 9.8e-71 270.8 181 74.6
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.7e-70 270.0 181 74.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.7e-70 270.0 181 74.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.2e-70 269.6 181 74.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.2e-68 263.8 181 71.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 2.0e-68 263.1 165 75.2
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.0e-68 263.1 243 60.1
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 5.0e-67 258.5 165 74.5
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 8.9e-64 247.7 163 76.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.6e-63 246.1 165 71.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.3e-54 217.2 151 63.6
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 8.3e-54 214.5 165 66.7
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.1e-53 214.2 165 63.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.9e-53 213.4 174 59.2
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 7.3e-50 201.4 112 90.2
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 3.4e-47 192.6 156 55.8
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.4e-46 188.0 161 52.8
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.5e-42 176.4 98 83.7
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.5e-36 156.0 115 60.0
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 3.8e-22 109.4 54 87.0
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 8.4e-22 108.2 57 87.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-21 106.7 57 78.9
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.2e-21 105.9 57 84.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.7e-20 103.2 57 80.7
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.8e-19 100.5 57 77.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.9e-19 99.4 58 82.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.7e-19 98.6 57 77.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.5e-18 97.4 57 78.9
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.9e-18 97.1 108 45.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-17 93.6 64 70.3
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.1e-16 91.3 57 70.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.4e-16 90.9 124 36.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-16 90.1 89 50.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.4e-16 90.1 84 54.8
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.0e-16 88.2 57 71.9
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-11 74.3 49 69.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-11 73.6 49 67.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.7e-10 68.9 49 61.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 7.4e-10 68.6 43 72.1
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.8e-09 66.6 37 81.1
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.8e-09 66.6 37 81.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.3e-06 57.8 126 27.8


User provided reference genes

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