Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 4.1e-170 601.3 296 100.0
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 2.4e-138 495.7 297 83.5
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 8.5e-136 487.3 298 82.2
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 3.2e-135 485.3 297 81.1
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 2.7e-134 482.3 299 80.3
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 4.7e-134 481.5 296 80.4
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 8.0e-134 480.7 297 79.8
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 1.0e-133 480.3 291 80.4
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 1.5e-132 476.5 297 79.5
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.5e-132 476.5 299 80.3
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 3.4e-132 475.3 288 81.6
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 5.7e-132 474.6 297 79.5
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 1.3e-131 473.4 298 79.5
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.4e-130 469.9 299 77.9
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 3.5e-129 465.3 297 77.4
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 5.9e-129 464.5 297 77.4
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.7e-128 463.0 299 77.3
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.7e-128 463.0 297 77.1
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 2.5e-127 459.1 296 75.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.6e-126 456.4 315 73.3
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.1e-126 454.5 315 73.3
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 3.0e-125 452.2 300 77.0
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 4.0e-125 451.8 302 76.8
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.0e-125 451.8 297 77.1
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.2e-124 450.3 302 76.2
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.6e-124 449.1 292 76.0
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 7.5e-124 447.6 310 73.2
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.7e-123 446.4 299 75.6
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.7e-123 446.4 301 75.4
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.7e-123 446.4 273 79.9
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.1e-122 443.7 301 73.8
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.8e-122 443.0 298 74.5
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.8e-122 443.0 332 69.0
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.8e-122 443.0 301 73.1
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 3.2e-122 442.2 291 73.9
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 3.2e-122 442.2 302 74.5
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 5.4e-122 441.4 293 74.4
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 7.0e-122 441.0 309 72.8
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.5e-121 438.7 291 73.5
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 5.9e-121 438.0 301 73.4
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 7.8e-121 437.6 303 72.9
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.0e-120 437.2 303 72.9
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.0e-120 437.2 301 74.8
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.0e-120 437.2 293 73.7
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.7e-120 436.4 293 74.1
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 2.3e-120 436.0 305 71.8
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.9e-120 435.3 301 74.1
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 8.6e-120 434.1 273 76.9
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 8.6e-120 434.1 290 73.4
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.1e-119 433.7 303 72.6
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 1.5e-119 433.3 299 73.6
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 3.3e-119 432.2 302 73.2
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 5.6e-119 431.4 301 72.4
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 7.3e-119 431.0 301 72.4
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 7.3e-119 431.0 301 72.8
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 9.5e-119 430.6 301 72.4
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 9.5e-119 430.6 296 72.6
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 2.8e-118 429.1 298 71.8
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 3.6e-118 428.7 297 72.1
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 4.7e-118 428.3 304 71.7
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 6.2e-118 427.9 295 72.2
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.0e-117 427.2 295 72.2
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 3.1e-117 425.6 295 71.9
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 4.0e-117 425.2 302 73.5
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 4.0e-117 425.2 299 72.9
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 4.0e-117 425.2 295 72.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 8.9e-117 424.1 295 71.5
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 3.4e-116 422.2 323 68.7
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 4.4e-116 421.8 323 68.4
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 4.4e-116 421.8 295 71.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 9.8e-116 420.6 295 71.9
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.9e-115 419.1 297 72.4
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.4e-114 416.0 318 67.6
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 9.2e-114 414.1 298 70.5
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.7e-112 409.8 279 74.2
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 6.6e-112 407.9 257 78.6
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 8.6e-112 407.5 290 71.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.5e-111 406.0 280 73.2
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 7.3e-111 404.4 297 70.4
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 5.2e-109 398.3 284 72.5
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.9e-109 397.5 296 68.9
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.5e-105 385.6 303 64.0
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 1.1e-103 380.6 241 78.0
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.1e-103 380.6 290 63.4
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 3.3e-103 379.0 324 64.2
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 7.6e-100 367.9 298 62.4
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 2.2e-99 366.3 276 65.9
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.1e-98 364.0 248 72.2
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 1.6e-97 360.1 305 63.0
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 2.1e-97 359.8 292 65.1
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 2.3e-96 356.3 215 81.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.1e-96 355.1 247 73.3
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.7e-94 348.6 212 80.2
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.4e-90 337.0 243 71.6
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 9.3e-90 334.3 211 77.7
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 4.6e-89 332.0 241 71.8
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.1e-87 327.4 273 64.1
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.6e-84 314.7 431 46.6
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 7.1e-82 308.1 221 71.0
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 3.0e-80 302.8 299 51.2
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 3.9e-80 302.4 305 51.1
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.8e-77 293.5 248 62.1
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 3.1e-77 292.7 214 70.1
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.7e-75 287.0 238 64.3
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 2.7e-73 279.6 288 55.2
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 6.2e-70 268.5 178 77.5
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 6.9e-69 265.0 252 59.5
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 2.2e-67 260.0 149 82.6
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 2.9e-67 259.6 220 62.7
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 3.2e-66 256.1 314 44.9
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.8e-64 250.4 183 67.2
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 8.2e-62 241.5 233 60.1
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 4.1e-61 239.2 175 69.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 2.1e-57 226.9 200 62.5
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 6.7e-56 221.9 161 68.9
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 7.9e-49 198.4 111 82.0
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 8.8e-48 194.9 120 75.8
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.2e-44 184.5 134 69.4
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 7.2e-42 175.3 95 90.5
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 4.8e-38 162.5 289 36.3
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 4.5e-36 156.0 96 76.0
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 3.8e-35 152.9 85 84.7
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 8.0e-33 145.2 123 64.2
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.5e-31 141.0 152 51.3
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 3.7e-30 136.3 334 31.1
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 6.3e-30 135.6 241 34.9
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 2.2e-27 127.1 70 87.1
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 1.6e-25 120.9 157 45.2
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 5.7e-23 112.5 133 43.6
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.8e-19 99.8 92 59.8
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 2.8e-17 93.6 105 49.5
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.6e-12 77.8 89 51.7
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.6e-10 69.3 85 49.4
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 5.6e-10 69.3 31 87.1
Cfa016005 Carpinus fangiana HOM05D005614 ORTHO05D006759 4.7e-09 66.2 57 61.4
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.0e-08 63.2 54 59.3


User provided reference genes

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