Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1727.6 973 100.0
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1322.4 976 73.8
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1305.0 986 73.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1299.6 992 71.8
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1296.6 987 69.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1289.2 990 68.8
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1287.7 1037 67.5
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1285.8 991 70.8
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1285.8 981 69.7
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1278.8 995 69.7
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1278.5 1044 66.0
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1274.2 1066 67.1
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1274.2 991 69.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1273.5 996 69.7
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1270.4 1033 68.4
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1269.6 994 70.2
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1268.8 1029 66.9
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1267.7 1045 66.9
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1265.4 987 68.0
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1265.4 1046 67.7
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1264.6 990 68.7
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1261.9 979 69.3
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1261.9 979 69.3
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1259.2 987 68.3
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1256.5 1045 66.0
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1250.0 1025 68.1
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1249.6 995 67.7
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 1038 66.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1243.4 980 69.1
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1242.3 990 68.3
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 982 67.3
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 972 67.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 982 67.3
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 972 67.5
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1239.2 982 67.2
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1238.0 1003 68.1
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1235.3 986 67.4
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 977 66.8
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 995 69.9
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1230.7 976 66.9
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 977 69.2
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1228.4 976 69.2
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1226.5 999 67.4
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 984 67.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 975 67.6
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1220.3 976 67.5
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 985 66.7
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 976 67.1
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 976 67.1
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1217.2 979 67.9
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1215.7 976 67.0
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1215.3 981 67.5
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1213.7 986 66.8
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 1016 65.5
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 989 66.3
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1212.2 986 66.4
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 976 66.4
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 988 66.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 979 67.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 981 67.7
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 989 66.1
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1205.3 987 66.6
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1199.9 998 67.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 978 65.1
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 978 65.0
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1181.4 1041 62.9
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1181.0 981 68.5
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 1165 58.1
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1177.9 1039 63.8
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1176.8 984 65.0
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1170.6 1009 62.8
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1169.8 985 65.0
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1164.8 991 65.5
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1156.7 977 66.1
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1154.4 1012 62.5
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 995 63.6
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1124.8 980 63.0
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1114.0 996 58.9
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1109.7 823 72.9
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 973 63.4
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1098.6 832 70.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1097.4 990 60.1
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1094.0 919 66.5
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 6.7e-312 1074.7 886 66.6
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 3.9e-310 1068.1 1005 58.6
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 3.3e-309 1065.1 993 60.0
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 1.8e-307 1059.3 995 58.9
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 2.9e-297 1025.4 849 65.7
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.9e-280 969.5 981 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.3e-277 958.7 1006 55.5
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 9.9e-274 947.2 975 57.2
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 6.2e-268 927.9 1071 50.0
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-264 917.1 989 54.2
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 2.4e-264 916.0 1059 48.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 2.4e-264 916.0 993 53.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 5.7e-237 825.1 759 60.1
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.2e-222 775.4 596 67.8
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.5e-205 720.7 613 64.9
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.7e-205 718.8 710 56.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 9.8e-205 718.0 804 53.2
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.0e-201 708.0 960 48.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.3e-196 691.0 548 68.4
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 4.6e-178 629.4 595 59.2
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.3e-169 601.3 557 59.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 4.2e-155 553.1 997 34.9
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 3.8e-132 476.9 355 65.4
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.1e-126 456.8 305 71.5
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.5e-125 454.9 391 62.7
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.4e-125 453.8 269 85.1
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 2.5e-123 447.6 277 81.6
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.7e-122 444.1 278 80.6
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.7e-119 434.9 910 31.6
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.4e-110 404.4 364 60.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 7.7e-109 399.4 290 70.7
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 3.0e-105 387.5 920 31.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.3e-104 384.0 375 56.8
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.8e-102 378.3 1278 30.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 4.7e-90 337.0 366 54.1
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-87 328.2 290 59.0
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.2e-79 301.6 168 88.1
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-73 282.3 256 59.8
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.5e-72 276.6 202 67.3
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 6.0e-69 266.9 222 64.0
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 9.5e-67 259.6 145 89.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 6.6e-60 236.9 150 79.3
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.1e-58 229.9 144 75.0
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-57 229.6 186 66.1
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 9.9e-56 223.0 152 71.1
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-50 205.7 128 75.8
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 8.1e-50 203.4 214 57.5
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.6e-48 196.8 128 72.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 9.9e-48 196.4 173 65.3
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 6.4e-47 193.7 105 90.5
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-45 187.6 131 68.7
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.1e-44 184.1 98 91.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.8e-42 178.3 161 60.9
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 2.7e-37 161.8 122 69.7
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-37 161.0 109 71.6
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.6e-29 134.4 85 74.1
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 5.8e-24 117.5 85 65.9
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.7e-23 115.9 139 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.8e-20 105.9 165 38.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 5.7e-19 100.9 202 37.6
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.8e-15 88.2 42 97.6
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 5.9e-08 64.3 59 47.5
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 7.2e-06 57.4 41 73.2


User provided reference genes

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