Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.1e-132 475.7 237 100.0
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.2e-92 343.6 217 79.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 3.6e-92 342.0 181 92.8
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 7.9e-92 340.9 184 89.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-91 340.5 186 88.7
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.0e-91 340.5 186 88.7
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 1.8e-91 339.7 244 73.4
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.8e-91 339.7 244 73.4
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 3.0e-91 339.0 206 82.0
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.9e-91 338.6 186 88.7
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.8e-91 337.4 186 87.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.0e-90 336.3 213 80.3
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.5e-90 335.9 213 79.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 5.7e-90 334.7 219 79.0
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.7e-90 334.7 238 72.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 7.4e-90 334.3 185 87.6
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 7.4e-90 334.3 186 87.1
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 9.7e-90 334.0 225 76.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.7e-89 333.2 197 82.2
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.7e-89 333.2 196 86.2
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.7e-89 333.2 198 84.3
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.2e-89 332.8 236 73.3
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.8e-89 332.4 198 83.3
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.8e-89 332.4 182 89.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 3.7e-89 332.0 212 77.8
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 6.3e-89 331.3 241 71.8
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 6.3e-89 331.3 191 85.3
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 6.3e-89 331.3 237 73.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 8.2e-89 330.9 194 85.1
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 8.2e-89 330.9 185 86.5
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.1e-88 330.5 198 84.8
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.4e-88 330.1 190 85.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.8e-88 329.7 201 84.1
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 2.4e-88 329.3 192 86.5
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 2.4e-88 329.3 192 86.5
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.4e-88 329.3 237 71.3
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 3.1e-88 328.9 196 84.2
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 3.1e-88 328.9 232 75.4
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.1e-88 328.9 182 87.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 3.1e-88 328.9 180 87.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 4.1e-88 328.6 191 86.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 4.1e-88 328.6 193 85.5
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 4.1e-88 328.6 193 85.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 4.1e-88 328.6 232 75.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 4.1e-88 328.6 224 75.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 5.3e-88 328.2 190 84.7
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.3e-88 328.2 188 85.1
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 5.3e-88 328.2 186 84.4
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 6.9e-88 327.8 194 85.1
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 6.9e-88 327.8 194 85.1
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 6.9e-88 327.8 229 75.5
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.2e-87 327.0 199 82.9
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.2e-87 327.0 186 86.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.5e-87 326.6 190 83.7
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.0e-87 326.2 221 75.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.0e-87 326.2 221 75.1
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 2.0e-87 326.2 187 85.0
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 2.6e-87 325.9 230 74.3
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.6e-87 325.9 237 73.8
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.6e-87 325.9 198 83.3
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.4e-87 325.5 226 75.7
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.4e-87 325.5 184 89.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.4e-87 325.5 237 73.0
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.4e-87 325.5 186 86.6
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.5e-87 325.1 238 73.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.5e-87 325.1 232 73.3
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.9e-87 324.7 185 85.4
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 5.9e-87 324.7 177 89.3
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 7.7e-87 324.3 222 74.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.0e-86 323.9 185 85.9
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.3e-86 323.6 185 84.9
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 242 71.5
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.7e-86 323.2 239 70.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.7e-86 323.2 177 88.7
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.9e-86 322.4 186 83.9
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.9e-86 322.4 185 84.9
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.8e-86 322.0 208 78.4
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 5.0e-86 321.6 181 86.7
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 5.0e-86 321.6 236 71.6
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 193 82.9
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.5e-85 319.3 238 71.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.2e-85 318.9 209 76.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 4.2e-85 318.5 225 74.2
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.5e-85 318.2 238 71.8
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.2e-85 317.8 232 72.4
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.4e-85 317.4 189 83.6
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.7e-84 315.8 238 69.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 4.7e-84 315.1 228 70.6
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 6.1e-84 314.7 221 71.0
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 7.9e-84 314.3 187 81.8
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 7.9e-84 314.3 190 82.6
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.0e-83 313.9 188 80.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.3e-83 312.8 235 70.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 6.7e-83 311.2 177 84.7
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 8.8e-83 310.8 233 72.5
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 8.8e-83 310.8 230 71.7
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.1e-82 310.5 196 77.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.6e-82 309.3 164 90.2
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 5.7e-82 308.1 177 83.6
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 9.7e-82 307.4 201 73.6
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.8e-81 305.8 182 84.1
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.4e-80 302.8 207 73.9
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.1e-80 302.4 225 70.7
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 5.3e-80 301.6 184 79.3
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.5e-79 300.1 180 80.0
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.2e-78 296.2 231 68.4
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 8.5e-78 294.3 181 78.5
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.3e-75 286.2 162 88.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.6e-74 282.7 226 66.4
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.4e-74 282.0 283 56.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 8.2e-73 277.7 160 78.8
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 3.5e-71 272.3 190 70.0
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.0e-70 270.8 150 86.7
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 3.8e-70 268.9 198 70.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.6e-68 263.5 186 67.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.8e-67 260.0 193 68.9
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.7e-65 253.4 200 66.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.2e-65 253.1 237 61.2
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 9.1e-64 247.7 165 70.3
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.6e-60 235.7 172 69.8
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.8e-57 225.3 122 89.3
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 4.1e-48 195.7 136 70.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.6e-47 193.7 153 67.3
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.5e-47 192.2 160 64.4
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.1e-45 187.6 118 76.3
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.6e-44 183.7 112 83.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.5e-42 177.2 118 74.6
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 2.0e-42 176.8 104 84.6
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 2.6e-42 176.4 104 83.7
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.4e-40 169.9 90 87.8
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-36 156.8 128 65.6
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 9.2e-32 141.4 82 85.4
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.2e-31 141.0 124 60.5
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.9e-30 136.0 147 42.2
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 5.1e-30 135.6 78 85.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.5e-29 133.3 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.6e-29 132.1 87 79.3
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.6e-23 114.0 77 76.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.8e-17 92.8 92 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 6.4e-17 92.0 63 65.1
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.1e-16 88.6 49 87.8
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-11 74.3 72 54.2
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-09 67.0 47 66.0
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.2e-08 63.2 42 69.0
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-06 58.2 51 56.9


User provided reference genes

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