Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.1e-85 320.1 175 100.0
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.6e-65 251.9 150 88.0
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.4e-37 160.2 118 67.8
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 9.5e-34 147.5 124 58.1
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.1e-33 146.4 138 57.2
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.8e-33 146.0 131 55.0
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.7e-33 145.2 129 55.8
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.0e-32 144.1 126 57.1
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.3e-32 142.9 128 56.2
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.1e-32 142.5 128 57.8
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.1e-32 142.5 127 56.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 4.0e-32 142.1 126 57.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 5.2e-32 141.7 122 57.4
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 5.2e-32 141.7 139 54.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 8.9e-32 141.0 141 52.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 8.9e-32 141.0 125 56.8
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.5e-31 140.2 144 54.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.6e-31 139.4 149 52.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 9.8e-31 137.5 145 52.4
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.2e-30 136.3 136 52.2
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.9e-30 136.0 126 55.6
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.9e-30 136.0 135 52.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.9e-30 136.0 141 51.8
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 8.3e-30 134.4 142 51.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 8.3e-30 134.4 134 53.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.4e-29 133.7 139 54.0
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.9e-29 133.3 134 53.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.1e-29 132.1 124 57.3
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 5.4e-29 131.7 124 54.8
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 7.0e-29 131.3 122 57.4
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 9.2e-29 131.0 126 55.6
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 9.2e-29 131.0 129 53.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.2e-29 131.0 148 51.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 9.2e-29 131.0 166 47.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.2e-29 131.0 140 51.4
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.2e-29 131.0 150 48.0
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 9.2e-29 131.0 158 50.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.5e-28 129.0 119 57.1
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.6e-28 128.6 137 53.3
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 7.8e-28 127.9 121 55.4
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 7.8e-28 127.9 129 51.2
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.0e-27 127.5 128 52.3
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.7e-27 126.7 134 50.7
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.3e-27 126.3 143 51.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.3e-27 126.3 146 50.7
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 3.9e-27 125.6 132 50.8
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 5.0e-27 125.2 134 51.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.0e-27 125.2 121 55.4
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 6.6e-27 124.8 124 52.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 6.6e-27 124.8 133 50.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 6.6e-27 124.8 141 48.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 8.6e-27 124.4 121 52.1
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 8.6e-27 124.4 119 52.1
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.5e-26 123.6 127 49.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.9e-26 123.2 141 53.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.3e-26 122.5 120 48.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 7.3e-26 121.3 131 53.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 9.5e-26 120.9 129 48.8
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.2e-25 120.6 141 48.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.2e-25 120.6 119 52.9
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.1e-25 119.8 136 49.3
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.1e-25 119.8 123 51.2
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.1e-25 119.8 140 50.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.1e-25 119.8 124 48.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.8e-25 119.4 138 47.1
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.6e-25 119.0 137 51.8
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.7e-25 118.6 134 50.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.7e-25 118.6 134 50.0
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 4.7e-25 118.6 138 49.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 6.2e-25 118.2 147 45.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.8e-24 116.7 134 47.8
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.8e-24 116.7 134 47.8
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-24 116.3 140 45.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-24 115.9 176 40.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 5.2e-24 115.2 124 49.2
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.8e-24 114.8 178 41.0
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.8e-24 114.8 136 45.6
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 6.8e-24 114.8 137 46.7
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.2e-23 114.0 89 61.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.2e-23 114.0 132 48.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.5e-23 113.6 139 48.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.6e-23 112.8 116 48.3
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-23 112.5 134 50.7
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-23 112.5 142 47.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 4.4e-23 112.1 140 49.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 4.4e-23 112.1 140 49.3
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.8e-23 111.7 142 47.2
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 5.8e-23 111.7 178 39.3
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.5e-23 111.3 133 49.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 9.8e-23 110.9 133 50.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 9.8e-23 110.9 141 47.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 9.8e-23 110.9 133 50.4
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-22 110.5 141 46.1
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.2e-22 109.8 173 42.8
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 4.9e-22 108.6 135 49.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.4e-21 107.1 126 44.4
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.4e-21 107.1 166 41.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 4.1e-21 105.5 136 45.6
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 7.1e-21 104.8 126 45.2
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-20 104.0 136 45.6
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-20 104.0 136 45.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-20 104.0 146 47.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-20 103.6 134 45.5
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.6e-20 103.6 120 43.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.1e-20 103.2 143 42.7
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.1e-20 103.2 149 43.6
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.1e-20 103.2 149 43.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.7e-20 102.8 134 46.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.7e-20 102.8 132 45.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.7e-20 102.8 132 45.5
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.5e-20 102.4 109 48.6
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.5e-20 102.4 107 49.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.6e-20 102.1 134 46.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 6.0e-20 101.7 94 53.2
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 7.8e-20 101.3 136 44.9
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.0e-19 100.9 134 45.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-19 100.5 139 43.9
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.0e-19 99.4 139 44.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.9e-19 99.0 134 45.5
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.1e-18 97.4 83 54.2
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-18 96.7 89 53.9
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.9e-18 96.7 104 47.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.3e-18 95.5 94 51.1
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.6e-18 95.1 123 45.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 7.3e-18 94.7 92 52.2
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 3.6e-17 92.4 161 38.5
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-16 90.9 133 44.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-16 90.9 133 44.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-16 90.9 133 44.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-16 90.9 128 42.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.8e-16 90.1 139 38.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.3e-16 89.7 87 51.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-15 87.0 75 56.0
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 4.4e-15 85.5 96 46.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 5.8e-15 85.1 85 51.8
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.2e-14 83.2 113 40.7
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.2e-14 83.2 146 35.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.9e-14 82.8 130 40.8
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.9e-14 82.8 95 48.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 4.9e-14 82.0 117 42.7
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.1e-13 80.9 94 40.4
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.1e-13 78.2 124 42.7
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.2e-12 77.4 66 62.1
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.1e-12 76.6 86 48.8
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 2.3e-11 73.2 136 37.5
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.6e-09 65.9 79 46.8
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.4e-08 63.2 134 35.1
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 8.9e-08 61.2 90 38.9
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 7.6e-07 58.2 52 53.8
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.7e-06 57.0 132 33.3
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 4.9e-06 55.5 126 31.0


User provided reference genes

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