Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.5e-290 1001.5 548 100.0
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 6.0e-151 538.5 529 55.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 4.0e-147 525.8 529 54.1
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 5.4e-144 515.4 386 65.3
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.6e-143 513.8 545 52.3
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.6e-143 513.8 542 52.0
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.5e-143 512.7 534 51.1
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 7.8e-143 511.5 528 52.8
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 5.6e-141 505.4 528 51.3
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.6e-140 502.7 533 51.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.8e-139 500.4 533 51.8
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.8e-139 500.4 550 50.7
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 5.3e-139 498.8 552 53.8
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.7e-137 493.8 542 50.2
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 4.9e-137 492.3 542 50.0
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.1e-136 491.1 531 51.0
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.1e-136 491.1 537 49.0
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.2e-135 487.6 531 49.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.5e-135 486.1 549 51.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 6.6e-134 481.9 542 48.2
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.3e-133 479.6 546 49.1
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 4.3e-133 479.2 531 49.7
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 4.3e-133 479.2 545 47.3
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 3.6e-132 476.1 535 47.9
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 6.2e-132 475.3 526 49.8
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 4.0e-131 472.6 545 47.2
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.2e-130 471.1 528 49.2
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.2e-129 466.8 547 47.9
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.4e-128 463.4 584 48.8
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.2e-128 463.0 529 48.4
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 9.3e-128 461.5 582 49.7
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.6e-127 460.7 528 47.7
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 6.0e-127 458.8 532 47.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 1.0e-126 458.0 549 47.5
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.0e-126 458.0 550 46.5
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.3e-126 457.6 601 48.1
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.1e-126 455.7 531 46.9
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 6.7e-126 455.3 528 46.6
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 6.7e-126 455.3 587 48.0
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 8.7e-126 454.9 546 46.5
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 3.4e-122 443.0 525 47.0
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 4.5e-122 442.6 516 48.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 7.6e-122 441.8 526 46.8
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.3e-121 441.0 549 45.4
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.7e-121 440.7 549 45.4
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 2.2e-121 440.3 536 43.1
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 3.8e-121 439.5 548 45.3
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-120 438.0 543 46.6
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.4e-120 437.6 544 44.7
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 5.5e-120 435.6 363 59.0
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 9.3e-120 434.9 527 45.5
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.6e-119 432.6 550 46.4
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 6.0e-119 432.2 545 45.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.0e-118 431.4 527 45.5
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.3e-118 431.0 547 43.5
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 1.3e-118 431.0 547 44.1
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 2.5e-117 426.8 529 44.6
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 4.3e-117 426.0 536 43.3
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 9.0e-115 418.3 497 46.9
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.2e-114 417.9 529 45.6
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 3.4e-114 416.4 362 56.4
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 5.0e-113 412.5 542 45.0
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 6.5e-113 412.1 533 43.9
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 1.1e-112 411.4 524 43.1
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 7.2e-112 408.7 545 45.0
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 2.1e-111 407.1 546 44.1
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.3e-110 404.4 551 44.6
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.3e-110 404.4 549 44.8
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.8e-110 404.1 268 69.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.8e-110 404.1 534 45.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 2.3e-110 403.7 624 47.0
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.3e-110 403.7 345 57.7
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 3.9e-110 402.9 536 43.5
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-109 401.4 540 43.5
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.3e-108 397.9 540 42.6
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.3e-108 397.9 265 68.7
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 4.8e-108 396.0 552 43.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.1e-107 394.8 528 42.8
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.2e-106 391.3 332 56.0
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.0e-106 390.6 564 42.7
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.9e-105 386.7 243 70.4
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 3.8e-105 386.3 565 41.9
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.5e-105 385.2 243 70.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-104 384.8 516 41.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 3.2e-104 383.3 556 43.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 3.2e-104 383.3 561 41.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.2e-104 383.3 527 43.3
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.2e-104 382.9 534 41.2
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 5.5e-104 382.5 547 41.9
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.2e-103 381.3 542 39.5
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.4e-102 377.9 374 52.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 3.9e-102 376.3 530 41.7
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.5e-101 373.6 559 42.0
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.3e-100 371.3 245 66.1
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.4e-99 367.1 542 42.3
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 5.3e-99 365.9 348 54.6
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 2.6e-98 363.6 259 65.3
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.0e-97 361.7 524 41.4
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.7e-97 360.9 533 41.1
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.9e-96 357.5 313 55.9
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 9.4e-96 355.1 348 52.0
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 2.7e-95 353.6 469 44.6
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.9e-94 349.7 566 38.0
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 7.0e-91 339.0 358 49.4
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 3.8e-89 333.2 594 43.1
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.1e-87 327.4 543 38.3
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.3e-81 308.1 267 55.4
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.2e-81 307.4 291 56.7
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.5e-81 305.8 425 44.7
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.9e-80 304.3 522 39.3
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.1e-79 300.8 528 35.8
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.1e-79 300.8 460 42.0
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.7e-79 300.4 535 37.6
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.0e-78 298.5 196 67.9
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.3e-76 291.6 254 53.9
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.2e-76 290.8 498 38.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 4.1e-75 286.6 432 41.4
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 4.0e-70 270.0 549 34.4
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 3.7e-68 263.5 307 43.3
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.1e-67 261.9 490 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 2.4e-67 260.8 262 50.4
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 7.0e-67 259.2 526 32.7
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 2.0e-66 257.7 467 38.1
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 8.6e-65 252.3 420 38.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.0e-61 241.1 180 61.7
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 5.9e-58 229.6 357 42.3
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.8e-53 212.2 133 70.7
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.5e-48 198.4 246 44.7
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 3.1e-38 164.1 126 60.3
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 7.6e-37 159.5 184 41.8
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 2.5e-32 144.4 481 29.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.6e-31 140.6 145 50.3
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 2.4e-27 127.9 275 34.9
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.1e-23 114.8 159 43.4
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 4.0e-22 110.5 106 49.1
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 5.3e-22 110.2 276 31.9
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-20 105.5 273 32.6
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 2.9e-20 104.4 308 28.9
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.3e-17 95.5 114 39.5
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 5.1e-17 93.6 75 56.0
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.5e-16 92.0 65 55.4
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-16 90.9 74 59.5
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-16 90.9 67 53.7
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.4e-16 89.7 76 61.8
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.3e-15 89.0 78 57.7
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.1e-15 86.3 72 62.5
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 4.0e-14 84.0 230 34.3
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.3e-08 64.3 69 55.1
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 5.3e-06 57.0 84 33.3
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 6.9e-06 56.6 106 34.9


User provided reference genes

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