Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 2.9e-122 441.8 209 100.0
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 4.1e-76 288.5 200 68.0
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 9.2e-76 287.3 189 71.4
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.3e-74 282.7 181 70.7
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.5e-73 279.3 179 70.9
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 3.3e-73 278.9 180 69.4
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 4.3e-73 278.5 168 75.6
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.2e-72 276.9 179 70.4
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 1.6e-72 276.6 180 70.0
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 2.1e-72 276.2 185 70.3
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 2.1e-72 276.2 177 71.8
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.6e-72 275.4 168 74.4
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 3.6e-72 275.4 191 66.0
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 4.7e-72 275.0 177 70.1
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 6.1e-72 274.6 178 70.8
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 8.0e-72 274.2 168 73.8
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 8.0e-72 274.2 185 66.5
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.4e-71 273.5 181 69.6
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 8.9e-71 270.8 163 72.4
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 2.6e-70 269.2 171 71.9
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 2.6e-70 269.2 169 70.4
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 9.8e-70 267.3 166 72.9
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 9.8e-70 267.3 148 79.1
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 1.3e-69 266.9 179 67.0
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.3e-69 266.9 172 70.9
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 3.7e-69 265.4 179 67.0
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.7e-69 265.4 148 78.4
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 6.4e-69 264.6 182 64.3
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 8.3e-69 264.2 148 77.7
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 1.1e-68 263.8 183 66.7
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.9e-68 263.1 164 69.5
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 2.4e-68 262.7 162 72.2
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 2.4e-68 262.7 182 64.8
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.4e-68 262.7 162 72.8
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 2.4e-68 262.7 148 77.7
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 3.2e-68 262.3 180 66.1
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 7.0e-68 261.2 167 70.7
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 7.0e-68 261.2 156 72.4
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 9.2e-68 260.8 172 69.8
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.6e-67 260.0 179 64.8
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.6e-67 260.0 168 69.0
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 2.0e-67 259.6 162 69.8
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 2.0e-67 259.6 178 67.4
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 3.5e-67 258.8 179 63.7
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 6.0e-67 258.1 166 68.7
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 6.0e-67 258.1 154 74.0
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.0e-66 257.3 175 65.1
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.0e-66 257.3 180 67.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.3e-66 256.9 179 63.7
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.7e-66 256.5 155 71.6
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 3.0e-66 255.8 177 65.5
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.0e-66 255.8 190 61.6
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.0e-66 255.8 170 69.4
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 3.0e-66 255.8 179 63.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 3.9e-66 255.4 179 65.9
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 6.6e-66 254.6 161 68.3
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 6.6e-66 254.6 156 71.2
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.6e-66 254.6 170 68.2
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.6e-66 254.6 170 68.2
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 1.1e-65 253.8 179 63.7
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.5e-65 253.4 184 62.5
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.5e-65 253.4 138 81.2
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 2.5e-65 252.7 157 69.4
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 2.5e-65 252.7 143 76.9
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 3.3e-65 252.3 155 71.0
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 3.3e-65 252.3 167 68.3
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 3.3e-65 252.3 165 66.7
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 5.6e-65 251.5 179 63.1
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 5.6e-65 251.5 175 64.6
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 1.2e-64 250.4 146 76.7
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 2.1e-64 249.6 143 75.5
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 2.1e-64 249.6 143 75.5
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 2.1e-64 249.6 143 75.5
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.8e-64 249.2 149 69.8
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 3.6e-64 248.8 157 69.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 3.6e-64 248.8 167 66.5
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.1e-63 247.3 175 64.0
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.4e-63 246.9 175 63.4
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.8e-63 246.5 178 63.5
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 6.8e-63 244.6 151 70.9
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 2.6e-62 242.7 148 71.6
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 2.6e-62 242.7 143 72.7
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 9.8e-62 240.7 143 72.7
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 2.9e-61 239.2 134 77.6
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.1e-60 237.3 172 62.8
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.4e-60 236.9 158 67.1
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 2.4e-60 236.1 146 69.9
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 4.6e-59 231.9 154 68.8
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.5e-57 226.9 148 66.9
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 7.3e-57 224.6 155 64.5
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.6e-56 223.4 151 64.9
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 3.0e-50 202.6 189 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 8.4e-45 184.5 159 50.9
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.2e-43 180.6 109 72.5
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.2e-43 180.6 100 82.0
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.5e-41 173.7 96 80.2
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.2e-38 164.1 103 69.9
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 7.6e-38 161.4 146 48.6
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.9e-36 156.8 162 46.9
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 4.2e-36 155.6 113 60.2
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.0e-34 151.0 121 56.2
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.1e-34 148.7 99 66.7
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 2.4e-31 139.8 97 61.9
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 1.5e-30 137.1 111 58.6
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.8e-23 113.6 77 61.0
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.5e-22 109.0 62 82.3
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 4.8e-16 89.0 59 59.3
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 7.6e-14 81.6 47 72.3
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 1.0e-13 81.3 72 50.0
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.8e-13 79.3 95 46.3
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 2.5e-12 76.6 52 67.3
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 3.7e-08 62.8 47 66.0
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 7.7e-06 55.1 50 50.0
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 7.7e-06 55.1 70 44.3


User provided reference genes

Program Settings