Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 5.6e-267 923.7 468 100.0
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 2.9e-223 778.5 478 80.1
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 6.2e-165 584.7 466 61.2
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 4.5e-163 578.6 424 67.5
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 7.6e-163 577.8 479 60.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 3.8e-162 575.5 424 65.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 3.8e-162 575.5 484 61.6
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 8.4e-162 574.3 481 58.8
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 8.4e-162 574.3 424 66.0
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.4e-161 572.8 481 60.5
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 7.1e-161 571.2 426 64.8
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.6e-160 570.1 482 60.0
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.6e-160 570.1 427 65.3
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.1e-160 569.7 425 64.7
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 2.7e-160 569.3 465 59.8
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 7.9e-160 567.8 429 63.2
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 2.3e-159 566.2 482 59.3
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 3.0e-159 565.8 467 61.5
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 8.7e-159 564.3 427 64.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 8.7e-159 564.3 425 62.6
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.9e-158 563.1 424 62.5
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 2.5e-158 562.8 461 59.7
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 3.3e-158 562.4 479 58.7
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 5.6e-158 561.6 482 60.2
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 9.6e-158 560.8 479 59.5
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 9.6e-158 560.8 461 60.7
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.3e-157 560.5 424 63.9
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.3e-157 560.5 424 63.7
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.8e-157 559.3 479 59.7
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 3.7e-157 558.9 424 63.7
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 3.7e-157 558.9 425 63.8
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 3.7e-157 558.9 461 60.1
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 4.8e-157 558.5 424 65.1
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 6.2e-157 558.1 482 58.7
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 2.4e-156 556.2 425 63.5
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 2.4e-156 556.2 485 58.6
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 3.1e-156 555.8 463 59.0
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 6.9e-156 554.7 425 62.8
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 6.9e-156 554.7 476 58.6
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 9.0e-156 554.3 428 62.9
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 1.5e-155 553.5 479 58.5
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 1.5e-155 553.5 479 58.2
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 2.6e-155 552.7 422 62.8
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 4.5e-155 552.0 426 61.7
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 5.8e-155 551.6 467 59.3
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 5.8e-155 551.6 479 58.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 7.6e-155 551.2 473 58.1
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 1.0e-154 550.8 423 61.2
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.3e-154 550.4 425 62.1
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.3e-154 550.4 425 63.3
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.7e-154 550.1 422 62.3
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.7e-154 550.1 425 61.4
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 2.2e-154 549.7 475 58.5
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 1.4e-153 547.0 424 61.1
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.9e-153 546.6 425 61.6
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 1.9e-153 546.6 434 62.0
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 5.5e-153 545.0 420 61.4
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 7.9e-152 541.2 427 61.4
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.0e-151 540.8 480 57.3
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 2.3e-151 539.7 430 60.7
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 5.1e-151 538.5 422 60.9
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 5.1e-151 538.5 425 61.2
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 8.7e-151 537.7 430 60.5
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.1e-150 537.3 431 60.6
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.9e-150 536.6 424 62.0
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 3.3e-150 535.8 474 57.2
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.3e-149 533.9 430 60.2
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 4.8e-149 531.9 430 59.1
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 1.4e-148 530.4 427 60.2
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 2.4e-148 529.6 430 59.1
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 5.3e-148 528.5 463 58.5
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 9.0e-148 527.7 430 59.8
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.0e-147 526.6 437 59.7
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 2.0e-147 526.6 473 57.5
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 2.6e-147 526.2 425 62.1
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 2.9e-146 522.7 432 59.5
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 3.8e-146 522.3 432 59.5
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 4.9e-146 521.9 478 54.6
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 6.7e-143 511.5 424 60.1
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 8.7e-143 511.1 423 60.3
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 5.1e-135 485.3 475 53.7
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.7e-133 480.3 474 51.5
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 8.2e-133 478.0 376 60.6
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 2.4e-132 476.5 385 60.5
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 2.0e-118 430.3 339 61.4
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 5.7e-118 428.7 422 49.3
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.3e-117 427.6 317 63.7
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 2.8e-117 426.4 383 55.9
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.1e-116 422.9 320 64.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 1.7e-114 417.2 471 45.2
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.6e-104 384.0 433 46.9
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 2.8e-96 356.7 392 47.7
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 6.1e-96 355.5 393 45.3
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 2.0e-91 340.5 362 49.4
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 2.0e-91 340.5 444 41.7
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 5.6e-89 332.4 398 44.2
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.8e-87 327.4 255 64.7
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 2.3e-82 310.5 215 68.4
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 2.5e-81 307.0 449 39.2
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 2.1e-80 303.9 220 66.4
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.4e-79 301.2 222 66.2
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.8e-79 300.8 300 52.3
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.4e-76 291.2 320 51.2
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 5.4e-76 289.3 239 58.6
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 6.0e-67 259.2 252 54.4
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.2e-59 235.0 211 52.6
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 6.0e-59 232.6 203 60.6
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 8.7e-58 228.8 189 57.7
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 9.6e-49 198.7 216 50.0
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.0e-42 177.2 119 67.2
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 6.7e-42 176.0 190 51.1
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 3.7e-40 170.2 119 64.7
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 2.7e-35 154.1 117 63.2
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 7.9e-27 125.9 115 54.8
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 4.3e-25 120.2 109 57.8
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.0e-21 106.7 100 53.0
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.1e-07 62.4 44 61.4
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 2.0e-06 58.2 33 69.7


User provided reference genes

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