Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.0e-146 523.5 281 100.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 9.6e-137 490.3 247 98.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 6.2e-128 461.1 249 90.4
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 2.2e-96 356.3 225 74.2
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 9.1e-95 350.9 225 71.1
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.2e-94 350.5 249 69.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.9e-94 348.2 227 71.8
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.0e-93 347.4 227 72.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.7e-93 346.7 234 70.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.9e-93 345.9 226 72.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.9e-93 345.9 227 70.9
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.9e-93 345.9 244 68.4
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.5e-93 344.7 227 72.2
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 6.5e-93 344.7 249 68.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 6.5e-93 344.7 225 71.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.1e-92 344.0 225 72.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.1e-92 344.0 227 71.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.4e-92 343.6 225 72.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.2e-92 342.4 244 68.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.2e-92 342.4 225 72.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-92 342.4 225 71.6
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.2e-92 342.4 227 70.9
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.2e-92 342.0 225 72.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.5e-92 341.7 234 67.5
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 7.2e-92 341.3 225 72.0
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 7.2e-92 341.3 225 72.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 7.2e-92 341.3 225 72.0
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 7.2e-92 341.3 238 68.1
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.2e-91 340.5 234 67.1
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.6e-91 340.1 225 72.0
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.6e-91 340.1 225 72.0
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.6e-91 340.1 227 69.2
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.6e-91 340.1 219 72.1
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.6e-91 340.1 219 72.1
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.1e-91 339.7 235 67.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.1e-91 339.7 227 70.9
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.7e-91 339.3 232 67.2
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 2.7e-91 339.3 227 70.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.7e-91 339.3 227 69.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.6e-91 339.0 235 68.5
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 3.6e-91 339.0 234 67.5
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 4.7e-91 338.6 225 70.2
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 4.7e-91 338.6 232 68.1
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.1e-91 338.2 227 70.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.1e-91 338.2 227 70.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 6.1e-91 338.2 232 69.4
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 7.9e-91 337.8 225 70.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.9e-91 337.8 227 70.0
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 7.9e-91 337.8 236 69.5
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 7.9e-91 337.8 227 70.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.0e-90 337.4 255 65.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.0e-90 337.4 227 68.7
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 1.0e-90 337.4 232 69.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.4e-90 337.0 236 67.8
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.3e-90 336.3 227 69.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.3e-90 336.3 227 69.6
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.3e-90 336.3 227 70.0
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 2.3e-90 336.3 219 71.2
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.7e-90 334.7 224 67.9
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 6.7e-90 334.7 222 70.7
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 8.8e-90 334.3 237 66.7
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.1e-89 334.0 226 67.7
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.1e-89 334.0 223 69.5
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.5e-89 333.6 225 69.8
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 2.6e-89 332.8 234 65.8
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 4.4e-89 332.0 227 69.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 5.7e-89 331.6 225 68.0
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 5.7e-89 331.6 225 68.0
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 7.4e-89 331.3 234 67.9
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 7.4e-89 331.3 227 67.0
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.3e-88 330.5 225 68.4
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.7e-88 330.1 225 68.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.8e-88 328.6 237 66.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 8.2e-88 327.8 228 66.2
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 8.2e-88 327.8 231 68.0
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-87 327.4 237 67.5
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.1e-87 327.4 227 66.5
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.1e-87 327.4 225 67.6
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.4e-87 326.2 219 69.4
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 7.0e-87 324.7 236 65.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 9.1e-87 324.3 237 65.8
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 9.1e-87 324.3 222 68.9
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 5.0e-85 318.5 233 64.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.5e-84 316.2 205 72.7
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 9.4e-84 314.3 227 66.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 9.4e-84 314.3 227 66.1
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 8.0e-75 284.6 313 50.8
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.8e-74 283.5 219 63.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.4e-73 279.3 234 59.4
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 4.4e-73 278.9 262 55.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 9.8e-73 277.7 198 67.2
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 4.8e-72 275.4 233 56.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.5e-68 261.2 171 71.3
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.7e-67 258.8 251 50.2
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.5e-65 253.8 175 70.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.0e-65 253.4 382 38.7
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.3e-64 250.8 167 67.7
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.8e-63 246.9 176 68.2
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 2.4e-63 246.5 167 70.1
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.3e-61 240.7 226 51.8
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.6e-61 238.4 234 52.6
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 8.6e-61 238.0 234 52.6
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.6e-57 226.5 224 54.0
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.6e-57 226.5 208 52.9
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 9.5e-52 208.0 144 67.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.9e-48 195.7 208 52.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.3e-44 181.8 201 46.3
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-43 181.0 194 49.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.4e-42 177.6 111 71.2
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 4.0e-42 176.0 119 65.5
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 5.8e-33 145.6 96 68.8
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.1e-31 139.4 175 40.6
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.5e-30 136.3 127 57.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 4.6e-30 136.0 109 61.5
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.3e-29 133.7 125 59.2
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-25 120.2 108 53.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.4e-23 114.4 64 82.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.3e-20 103.2 110 50.9
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.4e-18 97.8 107 48.6
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.2e-11 72.4 43 76.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-06 58.2 68 44.1
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-06 58.2 68 44.1


User provided reference genes

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