Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0572900 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 4.0e-79 298.1 162 100.0
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.0e-33 146.4 86 82.6
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 3.3e-33 145.6 115 68.7
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 3.1e-31 139.0 89 73.0
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 3.1e-31 139.0 86 75.6
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 7.0e-31 137.9 91 69.2
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 7.0e-31 137.9 89 73.0
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 9.1e-31 137.5 91 69.2
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 9.1e-31 137.5 89 70.8
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 9.1e-31 137.5 89 70.8
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 9.1e-31 137.5 91 69.2
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 1.2e-30 137.1 91 69.2
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 2.0e-30 136.3 107 64.5
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 2.6e-30 136.0 89 70.8
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 3.5e-30 135.6 89 70.8
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 3.5e-30 135.6 91 68.1
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 3.5e-30 135.6 90 68.9
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 4.5e-30 135.2 88 70.5
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 5.9e-30 134.8 89 70.8
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 5.9e-30 134.8 89 71.9
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 7.7e-30 134.4 88 70.5
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 7.7e-30 134.4 109 62.4
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 7.7e-30 134.4 89 69.7
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 7.7e-30 134.4 89 70.8
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 7.7e-30 134.4 89 69.7
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 1.0e-29 134.0 91 67.0
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.0e-29 134.0 89 69.7
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.3e-29 133.7 89 69.7
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 1.3e-29 133.7 89 70.8
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 1.3e-29 133.7 89 69.7
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 1.3e-29 133.7 89 69.7
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 1.3e-29 133.7 91 67.0
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 1.3e-29 133.7 89 69.7
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 1.7e-29 133.3 93 66.7
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 2.2e-29 132.9 89 69.7
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 2.2e-29 132.9 89 69.7
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 2.2e-29 132.9 93 66.7
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 2.9e-29 132.5 91 65.9
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 2.9e-29 132.5 87 70.1
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 2.9e-29 132.5 87 70.1
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 2.9e-29 132.5 111 61.3
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 68.5
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 68.5
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 67.4
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 69.7
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 68.5
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 3.8e-29 132.1 89 67.4
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 5.0e-29 131.7 87 70.1
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 5.0e-29 131.7 100 64.0
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 5.0e-29 131.7 91 64.8
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 5.0e-29 131.7 89 67.4
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 6.5e-29 131.3 89 67.4
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 6.5e-29 131.3 117 56.4
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 6.5e-29 131.3 89 68.5
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 6.5e-29 131.3 89 66.3
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 6.5e-29 131.3 102 60.8
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 6.5e-29 131.3 109 61.5
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 8.5e-29 131.0 87 70.1
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 8.5e-29 131.0 87 70.1
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 8.5e-29 131.0 89 67.4
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 8.5e-29 131.0 89 66.3
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 8.5e-29 131.0 89 66.3
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 8.5e-29 131.0 89 68.5
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 1.1e-28 130.6 89 67.4
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 1.1e-28 130.6 87 69.0
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.1e-28 130.6 89 67.4
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.5e-28 130.2 89 67.4
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.9e-28 129.8 89 67.4
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 2.5e-28 129.4 89 66.3
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 2.5e-28 129.4 89 66.3
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 2.5e-28 129.4 89 66.3
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 2.5e-28 129.4 87 70.1
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 2.5e-28 129.4 87 67.8
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 3.2e-28 129.0 89 67.4
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 4.2e-28 128.6 81 74.1
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 7.2e-28 127.9 89 65.2
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 7.2e-28 127.9 89 65.2
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 1.2e-27 127.1 125 55.2
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 1.6e-27 126.7 91 63.7
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.1e-27 126.3 111 58.6
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 2.7e-27 125.9 89 66.3
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 2.7e-27 125.9 89 66.3
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 2.7e-27 125.9 87 66.7
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 3.6e-27 125.6 89 66.3
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.6e-27 125.6 89 66.3
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.6e-27 125.6 89 66.3
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 3.6e-27 125.6 89 66.3
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 4.7e-27 125.2 91 62.6
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 6.1e-27 124.8 112 58.0
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.0e-26 124.0 87 66.7
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.0e-26 124.0 87 66.7
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.0e-26 124.0 89 65.2
Cc00_g23000 Coffea canephora HOM05D005087 ORTHO05D006427 1.4e-26 123.6 87 69.0
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 1.8e-26 123.2 87 65.5
Oeu049481.1 Olea europaea HOM05D005087 ORTHO05D006427 5.2e-26 121.7 79 72.2
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 6.7e-26 121.3 88 65.9
EL10Ac2g04364 Beta vulgaris HOM05D005087 ORTHO05D006427 6.7e-26 121.3 104 56.7
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 1.5e-25 120.2 89 61.8
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 9.7e-25 117.5 88 60.2
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 1.7e-24 116.7 86 61.6
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 2.8e-24 115.9 114 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 4.8e-24 115.2 125 49.6
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 8.2e-24 114.4 78 69.2
Os11g0577350 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.7e-22 109.4 89 76.4
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 3.5e-22 109.0 74 67.6
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 1.0e-21 107.5 79 64.6
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 6.5e-21 104.8 83 56.6
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 5.5e-20 101.7 66 71.2
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 5.5e-20 101.7 112 47.3
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.2e-18 95.1 108 47.2
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 1.5e-17 93.6 62 67.7
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 2.8e-16 89.4 80 51.2
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 2.0e-14 83.2 59 64.4
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.0e-10 70.9 82 46.3
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.5e-09 67.0 40 72.5
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 7.5e-09 64.7 80 35.0
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.7e-08 63.5 86 38.4
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 5.4e-07 58.5 86 33.7
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 5.9e-06 55.1 128 33.6


User provided reference genes

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