Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 0.0e+00 1080.9 568 100.0
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 6.4e-273 943.7 568 89.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.6e-266 921.8 569 84.7
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 6.7e-230 800.8 570 72.6
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 9.1e-227 790.4 490 82.7
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 2.9e-225 785.4 569 71.7
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.1e-224 783.5 569 72.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.2e-224 781.9 571 72.0
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 9.4e-224 780.4 573 71.9
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 6.1e-223 777.7 547 74.2
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 5.1e-222 774.6 573 72.8
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 5.7e-221 771.2 570 69.8
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.7e-220 768.5 576 70.3
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.1e-219 766.9 553 72.7
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.4e-219 765.8 550 72.7
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 2.4e-219 765.8 570 70.4
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.1e-219 765.4 570 69.8
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 3.1e-219 765.4 569 71.5
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 6.9e-219 764.2 590 69.7
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.2e-218 763.5 569 71.0
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.5e-218 763.1 570 70.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.6e-218 762.3 569 71.7
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.4e-218 761.9 554 72.9
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.5e-218 761.5 550 72.2
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.5e-218 761.5 549 72.9
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 4.5e-218 761.5 547 72.4
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.5e-218 761.5 570 69.8
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.3e-217 760.0 570 70.0
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 3.8e-217 758.4 573 69.6
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 3.8e-217 758.4 549 72.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 3.8e-217 758.4 572 69.9
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 8.5e-217 757.3 548 71.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.4e-216 756.5 572 69.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.5e-216 755.7 550 71.6
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.2e-216 755.4 573 71.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.2e-216 755.4 551 71.5
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 4.2e-216 755.0 575 69.7
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.0e-214 750.4 583 69.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.0e-214 750.4 551 72.8
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.4e-214 750.0 550 70.9
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.8e-214 749.6 583 69.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 3.0e-214 748.8 572 70.8
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.0e-213 746.1 542 71.2
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.6e-213 745.7 569 69.2
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.7e-212 743.0 576 68.8
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.8e-212 742.3 566 69.6
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.0e-210 736.1 568 68.5
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 4.5e-210 734.9 570 69.5
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.9e-210 734.6 570 68.9
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.7e-209 733.0 575 68.3
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 2.2e-209 732.6 570 68.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 6.5e-209 731.1 578 67.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.5e-208 729.2 568 67.8
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 2.5e-208 729.2 569 68.9
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.2e-208 728.8 550 70.4
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.5e-208 728.0 548 69.9
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 9.4e-208 727.2 573 69.5
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.2e-207 726.9 553 70.7
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.6e-207 726.5 555 70.5
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 6.1e-207 724.5 569 66.8
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 8.0e-207 724.2 571 68.3
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 8.0e-207 724.2 571 68.3
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.0e-206 723.8 572 65.2
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.3e-206 722.6 579 68.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 6.7e-206 721.1 562 67.8
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.2e-205 720.3 569 68.2
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.3e-205 718.8 531 70.4
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 7.5e-205 717.6 569 67.8
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.3e-204 716.8 576 67.9
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 6.3e-204 714.5 572 64.7
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.2e-204 714.1 550 69.3
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.4e-203 713.4 588 66.0
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-202 709.9 574 64.5
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.5e-202 708.8 574 64.3
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.5e-202 708.8 574 64.5
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-201 707.2 574 64.3
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.1e-199 699.5 575 66.4
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.8e-198 696.4 545 69.7
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.2e-198 694.9 554 67.0
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.6e-197 692.6 601 61.4
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 9.8e-197 690.6 616 61.7
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 5.4e-195 684.9 572 64.3
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 7.0e-195 684.5 552 68.5
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.3e-193 680.2 674 58.5
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.3e-193 680.2 572 63.6
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.5e-192 676.0 544 68.0
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.3e-192 675.6 581 66.3
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 5.5e-192 674.9 518 70.3
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.8e-190 669.8 587 63.2
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.3e-190 669.5 556 66.5
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 4.0e-190 668.7 506 70.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.8e-190 667.9 587 61.5
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.0e-189 666.4 572 62.8
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.4e-189 665.2 554 64.4
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 7.5e-189 664.5 550 67.6
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 3.5e-186 655.6 552 64.5
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 3.5e-186 655.6 552 64.5
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 3.5e-186 655.6 552 64.5
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.7e-185 653.3 558 63.6
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-185 653.3 582 61.0
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.9e-185 652.5 573 63.0
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 6.6e-185 651.4 573 62.8
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 7.3e-184 647.9 715 53.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 4.4e-181 638.6 503 67.8
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 5.8e-181 638.3 561 62.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.7e-180 635.6 571 59.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 7.3e-176 621.3 548 62.8
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 2.2e-164 583.2 575 58.1
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.4e-158 563.9 417 70.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 6.7e-129 465.3 384 65.6
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.5e-128 463.4 559 49.7
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.8e-126 457.2 582 49.1
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-122 444.5 514 51.8
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-122 444.5 514 51.8
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-122 444.5 514 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 5.3e-118 429.1 482 52.9
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.2e-109 401.4 266 74.8
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.6e-106 389.8 353 60.3
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 6.3e-79 299.3 252 65.1
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 2.7e-77 293.9 332 52.7
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 4.5e-77 293.1 217 70.5
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-72 277.7 195 72.8
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 7.5e-72 275.8 548 38.1
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 6.3e-71 272.7 162 83.3
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.8e-70 271.2 157 84.1
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 6.1e-66 256.1 296 52.7
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 7.0e-62 242.7 164 73.2
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-61 241.9 282 52.5
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 3.0e-60 237.3 426 38.3
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.6e-56 224.2 197 63.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.5e-51 207.6 143 70.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.0e-49 200.3 408 37.0
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.9e-48 195.7 134 70.9
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 8.3e-47 192.6 148 66.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 9.3e-38 162.5 605 29.4
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.7e-37 161.0 109 77.1
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 3.5e-37 160.6 180 57.8
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.4e-33 148.7 90 82.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 4.4e-32 143.7 142 58.5
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 3.0e-28 131.0 153 52.3
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.5e-27 127.9 68 88.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 6.2e-26 123.2 112 58.0
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.7e-23 115.2 78 70.5
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 6.0e-21 106.7 181 38.1
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.1e-19 102.4 58 89.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.2e-16 92.4 58 81.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.8e-15 87.4 64 75.0
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 6.5e-15 86.7 63 69.8
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-14 85.5 62 64.5
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.6e-13 82.0 86 48.8
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 7.9e-13 79.7 151 35.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.0e-12 79.3 130 39.2
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 5.7e-11 73.6 87 44.8
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 7.4e-11 73.2 50 76.0
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.5e-08 65.5 37 83.8
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.7e-07 62.0 33 84.8
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.2e-07 61.6 56 57.1
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 5.5e-06 57.0 53 50.9


User provided reference genes

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