Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.5e-189 666.0 339 100.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 6.9e-182 640.6 339 97.3
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 3.1e-134 482.3 343 75.8
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 9.0e-97 357.8 321 57.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.7e-93 346.3 304 57.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 3.0e-92 342.8 301 57.5
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.9e-91 340.1 321 57.0
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 5.6e-91 338.6 315 58.7
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 5.6e-91 338.6 306 56.2
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 7.3e-91 338.2 317 55.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.6e-90 335.9 320 53.8
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 4.8e-90 335.5 312 56.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.1e-90 334.7 318 55.3
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 6.9e-89 331.6 287 58.5
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.5e-88 330.5 315 56.2
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.0e-88 330.1 313 54.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.0e-88 330.1 316 56.0
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.6e-88 329.7 317 54.3
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.6e-88 329.7 317 55.5
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 3.4e-88 329.3 317 56.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 4.5e-88 328.9 297 56.6
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.7e-87 327.0 315 53.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.2e-87 326.6 250 63.6
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.1e-86 324.3 316 55.1
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.4e-86 323.9 343 51.9
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.4e-86 323.2 240 64.6
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 3.2e-86 322.8 313 52.7
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.2e-86 322.8 365 49.3
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 9.3e-86 321.2 317 53.3
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.6e-85 320.5 310 52.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.7e-85 319.7 354 49.2
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.7e-85 319.7 336 51.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.5e-85 319.3 319 55.2
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.6e-85 318.9 285 57.5
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 6.0e-85 318.5 349 50.7
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.0e-84 317.8 271 57.2
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.8e-84 317.0 271 57.2
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.3e-84 316.6 315 54.0
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 3.0e-84 316.2 313 52.7
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 3.0e-84 316.2 267 57.3
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.1e-84 315.5 373 47.7
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 6.7e-84 315.1 318 52.2
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.1e-83 314.3 315 52.4
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-83 313.9 363 47.9
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.5e-83 313.9 292 54.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.9e-83 313.5 317 52.4
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.3e-83 312.8 313 52.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.3e-83 312.8 313 52.4
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 5.6e-83 312.0 314 52.9
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.4e-83 311.6 288 54.9
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.6e-82 310.5 282 55.0
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.1e-82 310.1 348 49.7
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.8e-82 309.7 315 53.7
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.8e-82 309.7 278 54.0
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 4.8e-82 308.9 273 54.6
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.8e-82 308.9 273 54.9
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.8e-82 308.9 349 50.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 6.2e-82 308.5 317 50.5
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 6.2e-82 308.5 317 50.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.1e-81 307.8 316 53.2
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-81 307.8 280 53.2
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.1e-81 307.8 314 50.3
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.1e-81 307.8 314 50.3
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.8e-81 307.0 267 55.4
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.4e-81 306.6 271 54.6
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.1e-81 306.2 315 52.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 5.3e-81 305.4 279 55.6
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 5.3e-81 305.4 315 52.1
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 6.9e-81 305.1 268 54.9
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.9e-81 305.1 344 48.3
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 9.0e-81 304.7 237 61.2
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.2e-80 304.3 341 50.4
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.2e-80 304.3 312 49.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.6e-80 303.1 308 51.9
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.4e-80 302.8 344 48.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.5e-80 302.4 318 50.3
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.5e-80 302.4 318 50.3
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 5.8e-80 302.0 267 55.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 5.8e-80 302.0 349 47.9
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 5.8e-80 302.0 349 47.9
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.7e-79 300.4 268 54.1
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.2e-79 300.1 212 68.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.2e-79 300.1 313 51.1
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 4.9e-79 298.9 316 50.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.1e-78 297.7 280 53.6
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-78 296.2 353 47.9
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.6e-77 293.9 338 47.0
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 3.5e-77 292.7 282 53.5
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.6e-77 292.4 322 49.7
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.0e-77 292.0 318 48.4
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.0e-76 291.2 318 48.7
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.3e-76 290.8 318 48.7
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.8e-76 290.4 343 46.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 5.1e-76 288.9 261 55.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 6.7e-76 288.5 319 48.0
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.9e-75 287.0 358 47.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.5e-75 286.6 323 48.3
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 4.3e-75 285.8 274 51.8
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.3e-74 284.3 323 47.4
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.8e-73 280.4 356 44.9
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.8e-73 280.4 214 63.6
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 7.6e-72 275.0 244 58.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 5.5e-70 268.9 315 47.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 3.5e-69 266.2 320 46.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.5e-69 266.2 375 41.3
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.0e-68 263.1 211 60.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-67 261.2 320 46.9
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.4e-65 254.2 315 47.9
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 6.5e-63 245.4 319 44.8
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 4.5e-56 222.6 295 41.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.2e-54 216.5 210 50.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 3.1e-49 199.9 204 56.4
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 5.3e-49 199.1 218 49.5
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.3e-47 194.5 231 44.6
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-47 193.0 207 49.3
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-46 191.4 285 40.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-46 190.3 296 38.9
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.5e-46 189.1 286 40.6
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 5.2e-44 182.6 289 39.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.0e-43 180.6 365 32.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 7.4e-43 178.7 311 37.3
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 4.8e-42 176.0 228 46.9
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.2e-39 167.2 235 36.6
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.1e-37 160.6 215 45.6
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-36 157.1 185 46.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 4.0e-36 156.4 165 52.1
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 9.7e-35 151.8 244 41.8
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 4.8e-34 149.4 198 37.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.8e-34 149.4 132 55.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 6.3e-34 149.1 240 38.3
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.9e-30 137.5 98 60.2
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 7.2e-30 135.6 109 61.5
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.2e-24 118.2 158 43.0
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 3.5e-24 116.7 287 31.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.3e-22 110.2 147 41.5
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.9e-15 87.0 194 30.4
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 3.4e-11 73.6 199 25.6
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.5e-06 58.2 63 47.6


User provided reference genes

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