Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.1e-140 502.3 246 100.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.4e-136 488.8 247 98.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 2.8e-124 448.7 246 89.4
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 8.5e-97 357.5 236 72.0
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.0e-94 350.5 225 71.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.0e-94 349.0 242 68.2
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.7e-94 347.8 234 70.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 6.7e-94 347.8 234 71.4
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.1e-93 347.1 231 70.1
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.1e-93 347.1 233 70.4
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 3.3e-93 345.5 226 72.1
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 3.3e-93 345.5 243 68.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.4e-93 344.4 232 71.6
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 7.4e-93 344.4 225 71.1
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 9.7e-93 344.0 234 70.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.3e-92 343.6 225 72.0
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.7e-92 343.2 225 72.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.7e-92 342.0 225 71.6
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.7e-92 342.0 227 70.9
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.8e-92 341.7 243 68.7
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.8e-92 341.7 225 72.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.8e-92 341.7 225 72.0
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 6.3e-92 341.3 238 68.1
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 8.2e-92 340.9 225 72.0
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 8.2e-92 340.9 225 72.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 8.2e-92 340.9 225 72.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-91 340.5 243 64.6
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-91 339.7 225 72.0
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.8e-91 339.7 225 72.0
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.8e-91 339.7 227 69.2
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.8e-91 339.7 219 72.1
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.8e-91 339.7 219 72.1
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.4e-91 339.3 243 64.2
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.4e-91 339.3 234 68.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.4e-91 339.3 233 67.8
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.4e-91 339.3 227 70.9
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.1e-91 339.0 234 68.8
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 3.1e-91 339.0 227 70.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 3.1e-91 339.0 227 69.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 5.3e-91 338.2 243 68.3
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 5.3e-91 338.2 225 70.2
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 5.3e-91 338.2 219 71.7
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 7.0e-91 337.8 254 66.1
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 7.0e-91 337.8 241 64.3
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.0e-91 337.8 227 70.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.0e-91 337.8 227 70.0
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 7.0e-91 337.8 235 69.8
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 9.1e-91 337.4 225 70.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.1e-91 337.4 227 70.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 9.1e-91 337.4 219 71.7
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.1e-91 337.4 231 68.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 9.1e-91 337.4 227 70.5
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.2e-90 337.0 227 68.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.2e-90 337.0 235 68.1
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.6e-90 335.9 227 69.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.6e-90 335.9 227 69.6
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.6e-90 335.9 227 70.0
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 2.6e-90 335.9 219 71.2
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 7.7e-90 334.3 236 66.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 7.7e-90 334.3 231 67.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 7.7e-90 334.3 222 70.7
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.0e-89 334.0 230 67.0
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.0e-89 334.0 223 69.5
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.7e-89 333.2 225 69.8
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.7e-89 333.2 233 66.1
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 5.0e-89 331.6 233 68.2
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 5.0e-89 331.6 227 69.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 6.5e-89 331.3 225 68.0
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 6.5e-89 331.3 225 68.0
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 8.5e-89 330.9 227 67.0
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.9e-88 329.7 225 68.4
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.9e-88 329.7 225 68.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.2e-88 328.6 236 66.5
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 7.2e-88 327.8 231 68.0
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.6e-87 326.6 236 64.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.1e-87 326.2 239 65.3
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.7e-87 325.9 219 69.4
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 3.6e-87 325.5 228 65.8
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 4.7e-87 325.1 228 67.5
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 8.0e-87 324.3 225 67.6
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.0e-86 323.9 242 65.7
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-85 320.5 231 67.1
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 4.4e-85 318.5 227 66.1
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.2e-84 316.2 205 72.7
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-83 313.9 227 66.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-83 313.9 227 66.1
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 7.0e-75 284.6 319 50.8
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.0e-74 283.1 219 63.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 2.2e-73 279.6 233 59.7
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.8e-73 278.9 265 55.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 6.5e-73 278.1 202 66.3
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.5e-72 276.2 217 59.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.1e-67 260.8 171 71.3
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 2.0e-66 256.5 251 50.2
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.7e-65 253.4 393 38.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 2.3e-65 253.1 174 70.7
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.5e-64 250.4 167 67.7
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.1e-63 246.5 176 68.2
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 2.1e-63 246.5 166 70.5
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.0e-62 242.7 237 50.6
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.0e-61 240.0 235 51.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.6e-61 239.6 235 51.9
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.7e-57 226.9 208 52.9
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.3e-57 226.5 224 54.0
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 8.3e-52 208.0 144 67.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.3e-48 195.7 208 52.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.7e-44 182.6 200 46.0
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.9e-44 182.2 193 48.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.6e-42 177.2 111 71.2
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 4.6e-42 175.6 119 65.5
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 5.1e-33 145.6 96 68.8
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.8e-30 137.1 175 40.0
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 4.0e-30 136.0 109 61.5
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.0e-30 136.0 127 57.5
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.4e-29 132.9 110 62.7
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.3e-25 120.2 108 53.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.6e-23 114.0 64 82.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.9e-20 103.2 110 50.9
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 2.4e-19 100.1 107 50.5
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.5e-11 72.4 43 76.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-06 58.2 68 44.1
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-06 58.2 68 44.1


User provided reference genes

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