Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.4e-47 192.6 97 100.0
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.8e-38 160.2 97 86.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.6e-33 145.2 89 84.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 3.2e-23 111.7 89 62.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.2e-23 111.3 89 57.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.5e-23 110.9 91 58.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 7.1e-23 110.5 96 55.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.6e-22 109.4 96 55.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.1e-22 109.0 96 55.2
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.7e-22 108.6 96 54.2
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 3.5e-22 108.2 91 58.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 3.5e-22 108.2 91 58.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.0e-22 107.5 96 54.2
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.8e-21 105.9 96 53.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.8e-21 105.9 96 53.1
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.1e-21 104.4 91 54.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 5.1e-21 104.4 91 54.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 5.1e-21 104.4 96 51.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 6.7e-21 104.0 91 56.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 8.7e-21 103.6 96 52.1
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.5e-20 102.8 91 57.1
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.9e-20 102.4 86 55.8
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.5e-20 102.1 89 56.2
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.5e-20 102.1 96 50.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.5e-20 102.1 91 52.7
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.3e-20 101.7 89 55.1
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.3e-20 101.7 91 52.7
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 4.3e-20 101.3 91 54.9
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 4.3e-20 101.3 91 52.7
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.3e-20 101.3 91 52.7
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 5.6e-20 100.9 91 51.6
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.4e-20 100.5 91 54.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.4e-20 100.5 91 54.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.4e-20 100.5 96 53.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.4e-20 100.5 91 54.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 9.6e-20 100.1 91 51.6
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.3e-19 99.8 96 49.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.3e-19 99.8 96 53.1
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.3e-19 99.8 91 56.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.3e-19 99.8 91 54.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.6e-19 99.4 96 52.1
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.6e-19 99.4 91 56.0
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.6e-19 99.4 91 57.1
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 51.6
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 2.1e-19 99.0 96 47.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 51.6
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 50.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 50.5
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 52.7
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 52.7
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 50.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.1e-19 99.0 91 51.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.8e-19 98.6 91 51.6
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.8e-19 98.6 91 53.8
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.8e-19 98.6 91 50.5
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.8e-19 98.6 91 51.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.7e-19 98.2 96 49.0
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.7e-19 98.2 96 51.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.7e-19 98.2 96 51.0
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.7e-19 98.2 91 51.6
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.8e-19 97.8 91 49.5
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.8e-19 97.8 91 51.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.8e-19 97.8 91 51.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.8e-19 97.8 96 50.0
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.8e-19 97.8 91 54.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 8.2e-19 97.1 96 51.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 8.2e-19 97.1 91 49.5
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.2e-19 97.1 91 51.6
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 8.2e-19 97.1 91 50.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.1e-18 96.7 90 52.2
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.1e-18 96.7 91 51.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.4e-18 96.3 91 50.5
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.4e-18 96.3 91 50.5
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.4e-18 96.3 91 51.6
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.4e-18 96.3 91 51.6
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.4e-18 96.3 96 51.0
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.8e-18 95.9 91 50.5
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.8e-18 95.9 91 51.6
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.8e-18 95.9 91 49.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.4e-18 95.5 91 48.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.4e-18 95.5 91 49.5
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.4e-18 95.5 91 51.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 3.1e-18 95.1 99 49.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 3.1e-18 95.1 91 51.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.0e-18 94.7 91 49.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 5.3e-18 94.4 91 48.4
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 5.3e-18 94.4 92 52.2
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 6.9e-18 94.0 85 52.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 9.0e-18 93.6 91 48.4
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 9.0e-18 93.6 96 49.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 9.0e-18 93.6 91 51.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.2e-17 93.2 96 49.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-17 93.2 96 50.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.2e-17 93.2 89 49.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.2e-17 93.2 91 50.5
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.2e-17 93.2 79 55.7
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.5e-17 92.8 85 52.9
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.0e-17 92.4 91 48.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.0e-17 92.4 86 51.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.6e-17 92.0 91 51.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.4e-17 91.7 90 48.9
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.5e-17 91.3 85 50.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 7.6e-17 90.5 96 46.9
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.3e-16 89.7 89 49.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.9e-16 87.8 86 48.8
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 4.9e-16 87.8 91 49.5
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-14 82.8 71 59.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.9e-14 80.5 129 36.4
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.3e-11 73.2 89 47.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 6.9e-10 67.4 67 47.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.3e-08 63.2 97 40.2
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.9e-08 62.0 91 37.4
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.4e-07 59.7 73 42.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.5e-07 57.8 80 41.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.6e-06 55.1 60 43.3


User provided reference genes

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