Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.9e-215 750.0 374 100.0
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.9e-100 370.2 337 57.9
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.9e-96 356.3 283 62.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.9e-95 353.6 283 61.5
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 4.2e-95 352.4 283 61.8
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.2e-94 350.9 283 61.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.5e-94 349.4 283 60.8
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.8e-94 348.2 282 59.9
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.0e-93 347.8 283 60.4
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.3e-93 347.4 283 60.4
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.3e-93 347.4 283 60.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.3e-93 347.4 283 60.4
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.3e-93 347.4 283 60.4
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-93 347.4 338 54.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.1e-93 345.5 282 60.3
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 5.1e-93 345.5 283 60.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 5.1e-93 345.5 283 59.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.1e-93 345.5 282 59.6
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 5.1e-93 345.5 282 61.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 6.6e-93 345.1 283 60.1
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 8.7e-93 344.7 282 59.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-92 344.4 333 54.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.5e-92 344.0 282 59.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.3e-92 342.8 282 59.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 4.3e-92 342.4 282 58.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 4.3e-92 342.4 282 61.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.6e-92 342.0 282 59.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 5.6e-92 342.0 305 57.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 7.3e-92 341.7 282 58.9
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 9.6e-92 341.3 282 58.5
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 9.6e-92 341.3 347 51.6
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.6e-91 340.5 282 59.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.1e-91 340.1 332 53.0
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.1e-91 340.1 332 53.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.1e-91 340.1 281 58.7
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.6e-91 339.3 282 58.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 6.2e-91 338.6 282 59.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.1e-91 338.2 282 60.6
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.1e-90 337.8 277 61.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.1e-90 337.8 347 51.6
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.4e-90 337.4 332 54.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.4e-90 337.4 282 59.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.8e-90 337.0 282 59.2
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.4e-90 336.7 353 50.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.1e-90 336.3 282 57.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.1e-90 336.3 335 54.0
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.0e-90 335.9 282 56.7
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 5.3e-90 335.5 335 51.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 5.3e-90 335.5 282 58.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.3e-90 335.5 335 54.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 6.9e-90 335.1 282 57.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 6.9e-90 335.1 282 58.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 6.9e-90 335.1 296 56.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.0e-90 334.7 282 58.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.0e-90 334.7 330 53.0
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 9.0e-90 334.7 357 51.3
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.2e-89 334.3 281 59.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.5e-89 334.0 355 51.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.6e-89 333.2 333 53.2
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.6e-89 333.2 282 57.4
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.6e-89 333.2 282 59.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.6e-89 333.2 355 51.3
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.4e-89 332.8 279 58.8
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.4e-89 332.8 289 55.7
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.4e-89 332.4 333 53.5
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 4.4e-89 332.4 350 50.3
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.3e-88 330.9 282 57.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.7e-88 330.5 338 51.5
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.2e-88 330.1 335 51.9
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.9e-88 329.7 353 50.1
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.9e-88 329.7 282 57.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.8e-88 329.3 335 51.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.9e-88 328.9 282 56.7
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.9e-88 328.9 282 56.7
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 6.4e-88 328.6 309 54.7
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.4e-88 328.2 282 56.4
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.4e-87 327.4 333 50.8
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.4e-87 326.6 281 57.7
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.4e-87 326.6 308 55.5
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.2e-87 326.2 282 58.5
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 5.4e-87 325.5 277 58.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-86 324.3 302 56.0
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-86 323.9 371 46.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.9e-85 319.3 334 51.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.1e-84 317.8 265 59.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.9e-84 317.0 301 52.8
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 4.3e-84 315.8 282 55.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.3e-83 314.3 264 58.3
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.0e-81 307.0 264 58.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.6e-81 306.6 232 65.5
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-80 303.9 285 52.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.7e-80 303.9 265 57.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.2e-79 299.7 265 57.0
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.3e-77 294.3 281 53.4
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.8e-77 293.9 282 52.8
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.3e-76 289.3 265 54.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 9.6e-76 288.1 316 48.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-75 287.3 302 50.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.1e-74 283.1 282 52.8
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 9.9e-73 278.1 266 55.6
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.2e-70 271.2 273 49.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.3e-69 266.9 300 50.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 5.6e-68 262.3 261 52.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.3e-67 261.2 229 55.9
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 3.7e-67 259.6 301 46.2
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 3.1e-66 256.5 282 49.6
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-63 248.1 316 46.2
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 3.5e-62 243.0 273 46.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 4.6e-62 242.7 282 46.8
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 5.1e-61 239.2 202 58.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 3.3e-60 236.5 264 45.8
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.4e-58 230.3 283 47.7
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.5e-56 221.9 201 52.7
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 7.4e-52 208.8 174 58.6
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-50 204.1 230 43.5
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 4.5e-49 199.5 231 48.1
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.3e-48 198.0 161 60.9
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 6.5e-48 195.7 284 41.2
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 8.5e-48 195.3 230 40.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-44 184.9 149 59.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.7e-43 179.9 288 37.2
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.6e-38 163.3 278 37.8
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.6e-38 163.3 153 54.2
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.0e-34 149.1 125 60.8
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.0e-33 147.5 92 82.6
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.2e-32 144.1 89 84.3
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.0e-29 133.7 184 42.4
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.7e-27 126.7 272 35.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.4e-26 124.0 166 41.6
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 4.7e-22 109.8 84 63.1
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.8e-21 105.9 112 52.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.2e-20 105.1 84 60.7
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.2e-20 105.1 78 65.4
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.6e-20 104.0 84 59.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.8e-20 102.1 95 55.8
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.1e-18 98.6 289 30.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.8e-13 81.3 53 75.5
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.4e-12 77.0 65 60.0
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 5.7e-12 76.3 100 35.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.4e-10 71.6 54 63.0
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.7e-09 67.4 255 25.1
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.8e-09 65.9 82 43.9
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.5e-07 60.8 93 39.8


User provided reference genes

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