Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-155 552.7 274 100.0
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 8.5e-122 440.7 260 85.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.9e-98 362.5 259 66.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 7.3e-89 331.3 258 63.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 1.2e-88 330.5 261 62.1
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 1.8e-87 326.6 269 64.7
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 5.2e-87 325.1 267 60.3
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 6.8e-87 324.7 267 60.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 6.8e-87 324.7 267 60.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 8.9e-87 324.3 259 62.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 1.2e-86 323.9 267 60.3
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 2.0e-86 323.2 265 61.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 2.6e-86 322.8 267 60.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 4.4e-86 322.0 259 62.2
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 7.5e-86 321.2 262 62.2
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 9.8e-86 320.9 259 61.8
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 1.3e-85 320.5 261 61.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 1.7e-85 320.1 258 62.0
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 2.2e-85 319.7 258 60.9
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 2.2e-85 319.7 259 61.4
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.9e-85 319.3 261 62.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 2.9e-85 319.3 264 61.4
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 6.4e-85 318.2 261 61.7
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 1.1e-84 317.4 266 61.7
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 1.8e-84 316.6 260 61.5
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 2.4e-84 316.2 264 62.1
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 5.4e-84 315.1 260 60.8
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 5.4e-84 315.1 265 61.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 7.0e-84 314.7 265 59.6
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-83 313.9 261 60.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 1.6e-83 313.5 259 61.0
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 4.6e-83 312.0 261 60.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.9e-83 311.6 260 62.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 5.9e-83 311.6 269 58.7
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 5.9e-83 311.6 259 58.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 2.3e-82 309.7 258 59.3
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 3.0e-82 309.3 262 59.5
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 3.9e-82 308.9 259 59.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 6.6e-82 308.1 260 61.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 6.6e-82 308.1 265 60.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 6.6e-82 308.1 258 59.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 8.6e-82 307.8 260 60.8
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 8.6e-82 307.8 264 59.5
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 8.6e-82 307.8 256 59.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 1.9e-81 306.6 259 57.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 5.6e-81 305.1 265 58.5
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 7.3e-81 304.7 264 57.2
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.6e-80 303.5 261 60.2
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 1.6e-80 303.5 258 58.9
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.6e-80 303.5 261 60.2
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 2.1e-80 303.1 263 59.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 3.6e-80 302.4 262 58.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 4.7e-80 302.0 260 60.0
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 6.2e-80 301.6 259 58.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 1.4e-79 300.4 257 58.4
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.4e-79 300.4 276 57.2
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.4e-79 300.4 261 59.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-79 300.1 258 57.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 2.3e-79 299.7 258 60.5
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.3e-79 299.7 261 59.8
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 4.0e-79 298.9 262 57.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.2e-79 298.5 286 55.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 6.8e-79 298.1 256 57.8
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 6.8e-79 298.1 280 55.7
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 6.8e-79 298.1 263 57.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.2e-78 297.4 258 58.9
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.5e-78 297.0 258 56.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 2.0e-78 296.6 258 56.6
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 2.0e-78 296.6 259 56.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 2.6e-78 296.2 258 57.0
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 4.4e-78 295.4 260 57.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 7.5e-78 294.7 262 56.9
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 9.8e-78 294.3 269 56.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 1.3e-77 293.9 262 57.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 2.9e-77 292.7 265 56.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 1.1e-76 290.8 262 56.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 1.1e-76 290.8 262 56.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 1.4e-76 290.4 262 56.9
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 1.9e-76 290.0 263 57.4
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 4.1e-76 288.9 261 56.3
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 7.0e-76 288.1 258 56.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 7.0e-76 288.1 263 55.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 2.0e-75 286.6 258 56.2
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 3.5e-75 285.8 258 54.3
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 3.5e-75 285.8 258 55.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 1.0e-74 284.3 268 55.6
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.0e-74 284.3 268 55.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 1.3e-74 283.9 261 56.7
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 1.7e-74 283.5 261 55.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 2.1e-72 276.6 266 53.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 4.7e-72 275.4 258 54.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.8e-71 273.5 221 63.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 5.2e-71 271.9 260 53.5
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.0e-70 270.0 258 51.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 4.4e-70 268.9 231 56.3
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 4.1e-68 262.3 232 57.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.1e-68 262.3 278 47.8
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 4.6e-67 258.8 261 52.1
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 7.8e-67 258.1 231 55.8
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 2.5e-65 253.1 272 47.8
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.1e-64 250.0 273 47.3
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 4.7e-64 248.8 230 55.2
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.2e-64 248.4 279 48.4
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 9.9e-62 241.1 224 54.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-60 237.7 276 44.6
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 2.4e-60 236.5 276 44.2
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 3.5e-59 232.6 221 55.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 7.6e-54 214.9 183 60.1
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 1.3e-53 214.2 164 65.2
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.5e-46 189.1 273 41.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-35 154.5 126 60.3
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.4e-30 136.3 148 48.0
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.3e-29 134.4 98 65.3
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 6.3e-24 115.5 101 61.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.7e-19 100.1 178 34.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.7e-11 73.6 88 47.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.2e-06 58.2 53 56.6
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.4e-06 56.6 53 54.7


User provided reference genes

Program Settings