Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 3.2e-56 221.5 107 100.0
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 6.2e-20 100.9 96 57.3
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.1e-16 90.1 61 62.3
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 2.4e-16 89.0 60 58.3
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 3.2e-16 88.6 60 56.7
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 3.2e-16 88.6 57 59.6
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 4.2e-16 88.2 61 57.4
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.5e-16 87.8 85 49.4
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.5e-16 87.8 85 49.4
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 7.1e-16 87.4 90 52.2
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.6e-15 86.3 88 51.1
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 2.7e-15 85.5 82 52.4
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.7e-15 85.5 56 60.7
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 4.6e-15 84.7 57 57.9
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 6.0e-15 84.3 52 65.4
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 6.0e-15 84.3 96 49.0
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 7.9e-15 84.0 56 60.7
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.0e-14 83.6 65 56.9
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.8e-14 82.8 58 56.9
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 2.3e-14 82.4 82 52.4
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 3.0e-14 82.0 61 55.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 3.0e-14 82.0 71 54.9
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 3.9e-14 81.6 56 57.1
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 3.9e-14 81.6 76 52.6
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 3.9e-14 81.6 56 60.7
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 3.9e-14 81.6 91 47.3
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.9e-14 81.6 65 53.8
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 5.1e-14 81.3 65 55.4
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 5.1e-14 81.3 47 70.2
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 6.7e-14 80.9 55 56.4
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 6.7e-14 80.9 55 58.2
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 8.7e-14 80.5 47 72.3
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 8.7e-14 80.5 47 63.8
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 8.7e-14 80.5 58 56.9
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-13 80.1 56 58.9
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.1e-13 80.1 56 60.7
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 1.5e-13 79.7 58 55.2
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 1.5e-13 79.7 62 54.8
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 1.9e-13 79.3 52 59.6
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 4.3e-13 78.2 55 58.2
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 4.3e-13 78.2 55 58.2
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 4.3e-13 78.2 58 53.4
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 4.3e-13 78.2 61 55.7
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 5.6e-13 77.8 51 60.8
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 5.6e-13 77.8 56 57.1
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 7.4e-13 77.4 51 60.8
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 7.4e-13 77.4 51 60.8
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 9.6e-13 77.0 52 63.5
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 9.6e-13 77.0 55 58.2
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 9.6e-13 77.0 55 58.2
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 9.6e-13 77.0 55 58.2
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 9.6e-13 77.0 55 58.2
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 9.6e-13 77.0 56 55.4
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 9.6e-13 77.0 56 55.4
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 9.6e-13 77.0 56 57.1
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 1.3e-12 76.6 52 61.5
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.3e-12 76.6 56 60.7
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.3e-12 76.6 52 61.5
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 1.3e-12 76.6 54 57.4
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.6e-12 76.3 49 65.3
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.1e-12 75.9 56 53.6
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 2.8e-12 75.5 56 51.8
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 3.7e-12 75.1 56 53.6
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 3.7e-12 75.1 56 53.6
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 4.8e-12 74.7 53 58.5
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 6.2e-12 74.3 60 53.3
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 8.2e-12 73.9 51 56.9
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.1e-11 73.6 51 56.9
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.1e-11 73.6 73 49.3
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 1.4e-11 73.2 47 66.0
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 2.4e-11 72.4 68 50.0
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 2.4e-11 72.4 52 57.7
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.1e-11 72.0 71 47.9
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.1e-11 72.0 52 53.8
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.1e-11 72.0 64 48.4
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.1e-11 72.0 64 48.4
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 4.0e-11 71.6 51 58.8
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 5.3e-11 71.2 52 53.8
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.3e-11 71.2 53 54.7
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 5.3e-11 71.2 49 63.3
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 5.3e-11 71.2 60 48.3
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 6.9e-11 70.9 44 68.2
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 6.9e-11 70.9 89 39.3
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 9.0e-11 70.5 60 56.7
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 2.0e-10 69.3 83 41.0
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 2.0e-10 69.3 88 38.6
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 3.4e-10 68.6 51 49.0
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 3.4e-10 68.6 78 39.7
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 4.5e-10 68.2 47 61.7
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.3e-09 66.6 74 44.6
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.2e-09 65.9 74 44.6
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 4.9e-09 64.7 57 50.9
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 8.4e-09 63.9 80 43.8
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.5e-08 61.2 37 64.9
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 7.1e-08 60.8 83 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 3.5e-07 58.5 56 50.0
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 6.0e-07 57.8 44 47.7
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 6.7e-06 54.3 35 60.0


User provided reference genes

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