Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 0.0e+00 1084.7 540 100.0
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 8.3e-246 853.6 546 78.8
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 9.6e-194 680.6 541 63.6
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 7.6e-191 671.0 541 63.0
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.2e-190 669.5 574 60.5
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.4e-189 666.0 536 62.1
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 5.5e-189 664.8 537 61.8
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 9.3e-189 664.1 545 61.5
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.7e-188 662.5 538 62.3
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 8.7e-187 657.5 538 61.7
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.5e-186 656.8 537 62.2
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 2.8e-185 652.5 536 60.6
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.8e-185 652.5 535 60.4
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 6.2e-185 651.4 544 60.7
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 6.2e-185 651.4 534 61.0
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 6.2e-185 651.4 535 60.4
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 3.1e-184 649.0 547 60.9
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 4.0e-184 648.7 537 61.6
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 5.3e-184 648.3 545 59.8
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 6.9e-184 647.9 549 60.5
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 9.0e-184 647.5 535 59.6
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.2e-183 647.1 539 60.9
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.6e-183 646.0 543 60.6
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 5.8e-183 644.8 544 60.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.3e-182 643.7 536 62.7
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 2.9e-182 642.5 541 61.0
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 4.9e-182 641.7 544 60.3
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 6.5e-182 641.3 541 61.0
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.9e-181 639.8 538 59.9
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 2.5e-181 639.4 535 61.5
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.2e-181 639.0 544 59.2
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 3.2e-181 639.0 543 59.5
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 5.5e-181 638.3 535 59.6
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 5.5e-181 638.3 586 56.3
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 7.1e-181 637.9 541 59.9
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 9.3e-181 637.5 534 59.7
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 1.2e-180 637.1 546 58.6
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 2.7e-180 636.0 564 57.6
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 4.6e-180 635.2 541 59.9
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 7.9e-180 634.4 534 61.0
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 7.9e-180 634.4 548 59.9
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.8e-179 633.3 544 59.0
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 3.0e-179 632.5 538 58.0
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.9e-179 632.1 537 61.1
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 3.9e-179 632.1 538 58.0
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 3.9e-179 632.1 550 59.5
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 5.1e-179 631.7 560 60.0
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 5.1e-179 631.7 531 60.5
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.5e-178 630.2 544 59.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.9e-178 629.8 536 61.9
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.9e-178 629.8 536 61.9
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.9e-178 629.8 540 59.6
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.3e-178 629.0 534 59.6
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 5.7e-178 628.2 538 61.5
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 7.4e-178 627.9 535 58.5
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 9.7e-178 627.5 534 60.1
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.3e-177 627.1 536 61.4
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.3e-177 627.1 544 59.7
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 2.2e-177 626.3 564 57.6
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.2e-177 626.3 531 60.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.8e-177 625.9 556 57.0
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.4e-176 623.6 543 58.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 2.4e-176 622.9 546 60.3
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 4.1e-176 622.1 538 60.2
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 4.1e-176 622.1 543 58.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.3e-176 621.7 558 57.5
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 9.0e-176 620.9 522 60.2
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.9e-174 615.9 534 58.1
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 8.5e-174 614.4 551 57.4
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.1e-173 614.0 534 58.1
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.1e-173 614.0 553 58.2
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 5.5e-173 611.7 542 57.6
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 3.6e-172 609.0 638 50.3
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.1e-170 604.0 545 56.5
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 5.7e-170 601.7 535 56.1
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.4e-168 597.0 526 58.0
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 3.4e-167 592.4 545 56.7
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 2.3e-163 579.7 584 53.3
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 3.9e-163 578.9 527 55.0
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 5.1e-163 578.6 509 58.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.1e-162 577.4 542 55.5
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.1e-162 577.4 538 55.9
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.1e-162 577.4 492 59.3
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.6e-162 576.2 567 52.6
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 6.9e-160 568.2 462 64.3
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 8.5e-158 561.2 377 71.9
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.7e-156 555.4 488 59.2
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.7e-153 547.0 576 53.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.4e-152 543.1 524 55.0
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 2.4e-152 543.1 427 64.2
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 5.3e-152 542.0 477 60.2
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 7.7e-151 538.1 540 54.3
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.0e-150 537.7 556 52.0
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 8.0e-148 528.1 472 57.0
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.6e-143 513.8 506 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 6.5e-142 508.4 534 48.9
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-138 497.3 535 50.1
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.8e-136 490.3 566 45.8
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.0e-131 474.6 533 47.7
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 4.1e-128 462.6 460 52.6
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-127 461.1 551 45.9
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.7e-126 457.2 423 56.3
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 3.0e-123 446.4 276 73.6
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 2.6e-122 443.4 275 75.3
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 5.4e-120 435.6 342 62.3
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 7.8e-111 405.2 320 59.4
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.4e-99 367.9 217 77.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.8e-99 367.5 448 46.4
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 2.9e-97 360.1 524 42.4
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.5e-93 347.8 370 51.4
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.4e-88 330.5 386 49.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.1e-84 317.4 537 37.1
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 3.1e-83 313.5 360 49.4
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 3.4e-82 310.1 186 77.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-81 307.8 270 56.7
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 2.2e-81 307.4 186 74.7
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.2e-79 301.6 494 37.0
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.6e-79 299.7 173 78.0
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.9e-77 294.3 408 44.1
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 2.1e-76 290.8 516 36.6
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.5e-69 268.1 312 43.9
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.6e-68 264.6 318 49.4
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.7e-63 247.3 314 41.1
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.4e-56 224.9 140 69.3
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 5.9e-50 203.0 264 45.8
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 1.0e-49 202.2 124 75.0
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 4.2e-48 196.8 271 43.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.1e-47 194.5 275 43.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 2.1e-47 194.5 271 42.8
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.6e-42 177.6 234 47.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.7e-42 176.0 399 30.8
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 4.2e-40 170.2 587 26.9
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.1e-35 154.1 453 25.6
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 2.2e-33 147.9 124 57.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.1e-32 145.6 99 67.7
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 6.8e-30 136.3 83 73.5
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 8.8e-22 109.4 99 55.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.7e-18 97.8 60 73.3
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.3e-17 95.5 210 31.9
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.8e-15 87.8 59 64.4
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 7.0e-11 73.2 55 60.0
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.3e-08 64.3 168 27.4


User provided reference genes

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