Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 0.0e+00 1090.5 571 100.0
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.2e-110 404.8 557 44.9
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.5e-103 379.4 311 59.5
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.2e-102 378.3 587 42.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 6.7e-101 372.5 383 55.4
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 7.5e-100 369.0 359 54.9
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 4.8e-99 366.3 584 41.4
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 4.8e-99 366.3 321 57.3
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 6.3e-99 365.9 308 59.4
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.4e-98 364.8 308 58.8
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 7.0e-98 362.5 322 56.8
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 9.1e-98 362.1 304 59.5
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 1.2e-97 361.7 305 59.3
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.0e-97 360.9 322 55.9
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 2.0e-97 360.9 301 58.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 3.5e-97 360.1 305 59.3
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 5.9e-97 359.4 388 52.1
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.0e-96 358.6 305 57.4
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.7e-96 357.8 359 52.4
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 2.2e-96 357.5 591 42.1
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.2e-96 357.5 323 55.7
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 5.0e-96 356.3 541 45.3
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 8.5e-96 355.5 349 56.7
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.5e-95 354.8 301 57.1
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.5e-95 354.0 304 58.6
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.5e-95 354.0 303 58.4
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.5e-95 354.0 359 51.3
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 3.2e-95 353.6 303 56.8
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 7.2e-95 352.4 301 56.8
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.6e-94 351.3 360 49.4
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 8.0e-94 349.0 309 56.6
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 8.0e-94 349.0 301 56.1
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.0e-93 348.6 301 55.1
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.4e-93 348.2 311 54.0
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.8e-93 347.8 535 43.2
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 1.8e-93 347.8 355 53.0
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 4.0e-93 346.7 301 55.1
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 6.8e-93 345.9 349 54.2
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 6.8e-93 345.9 301 55.1
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.8e-93 345.9 510 43.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 8.8e-93 345.5 301 55.1
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 8.8e-93 345.5 301 56.5
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 2.0e-92 344.4 301 55.1
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.7e-92 342.8 301 55.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 9.8e-92 342.0 375 49.1
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 9.8e-92 342.0 544 42.1
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.3e-91 341.7 375 53.1
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.7e-91 341.3 447 44.3
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 4.8e-91 339.7 480 47.7
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.1e-90 338.6 369 49.9
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.4e-90 338.2 301 54.8
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 2.4e-90 337.4 308 55.2
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.1e-90 337.0 301 54.5
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 3.5e-89 333.6 358 49.2
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 5.0e-88 329.7 301 54.5
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 8.6e-88 328.9 584 40.6
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 8.6e-88 328.9 537 42.1
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-87 328.6 301 53.8
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.5e-87 328.2 414 43.2
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.9e-87 327.8 555 38.4
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.3e-87 327.0 556 40.3
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 5.5e-87 326.2 576 40.5
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.6e-86 324.7 503 39.4
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 3.6e-86 323.6 594 39.9
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.1e-86 322.8 376 45.5
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 8.0e-86 322.4 301 52.8
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.0e-85 322.0 290 54.1
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.4e-85 321.6 301 53.2
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.4e-85 321.6 301 53.2
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.0e-85 320.5 301 52.5
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.0e-85 320.5 301 52.5
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 8.9e-85 318.9 480 41.5
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-84 318.5 346 49.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.0e-84 317.8 301 52.2
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.6e-84 317.4 386 46.9
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.4e-84 317.0 403 44.2
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.4e-84 316.6 505 40.6
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.2e-83 314.3 344 48.8
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.2e-83 314.3 344 48.8
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.8e-83 313.9 564 40.1
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 4.9e-83 313.2 593 39.5
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 8.3e-83 312.4 270 56.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 8.3e-83 312.4 559 38.5
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 1.8e-82 311.2 644 38.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.4e-82 310.8 524 41.4
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.1e-82 310.5 339 50.4
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 3.1e-82 310.5 308 52.6
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 7.0e-82 309.3 588 39.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.2e-81 308.5 361 45.4
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.5e-81 306.6 307 49.8
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 4.5e-81 306.6 452 44.5
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.3e-80 304.3 298 49.7
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.3e-80 304.3 344 49.1
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.8e-80 303.5 298 49.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.1e-79 302.0 296 53.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 5.6e-79 299.7 343 48.4
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 2.0e-76 291.2 471 43.1
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.4e-76 290.4 361 42.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 9.8e-76 288.9 348 46.8
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-74 285.4 295 50.2
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.4e-74 284.3 383 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 1.2e-73 282.0 335 44.5
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.7e-73 280.8 304 48.7
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.5e-71 275.0 375 40.8
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 4.3e-71 273.5 335 42.1
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.4e-69 268.5 597 35.8
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.3e-67 261.9 293 47.1
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 2.2e-67 261.2 619 35.1
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.4e-66 258.5 339 39.2
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 8.6e-64 249.2 273 46.2
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.2e-58 230.7 271 46.1
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.5e-55 221.1 283 43.1
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.1e-54 218.0 217 51.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 3.1e-53 214.2 180 55.0
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 9.9e-52 209.1 189 51.9
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.4e-50 204.5 191 48.2
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.6e-48 196.4 263 43.3
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 5.3e-45 186.8 385 32.2
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.4e-37 162.2 199 46.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.4e-35 153.3 292 34.9
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 7.4e-31 139.8 123 60.2
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.4e-21 108.2 102 53.9
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 9.3e-18 96.3 108 45.4
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-15 89.0 118 38.1
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.8e-14 84.7 94 47.9
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.4e-13 81.6 63 61.9
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 2.0e-12 78.6 66 60.6
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.6e-09 67.8 65 47.7
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 7.4e-07 60.1 52 38.5
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.8e-06 57.4 51 54.9


User provided reference genes

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