Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0593600 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 4.2e-129 464.5 212 100.0
Zm00001eb072220 Zea mays HOM05D005025 ORTHO05D006499 2.3e-98 362.5 214 76.6
Manes.17G009400 Manihot esculenta HOM05D005025 ORTHO05D006499 3.5e-75 285.4 215 59.1
Hund14353 Selenicereus undatus HOM05D005025 ORTHO05D006499 6.0e-75 284.6 215 60.0
GSVIVG01013115001 Vitis vinifera HOM05D005025 ORTHO05D006499 1.3e-74 283.5 214 59.8
Lsat_1_v5_gn_3_19020 Lactuca sativa HOM05D005025 ORTHO05D006499 2.3e-74 282.7 213 59.2
Duzib068G0767 Durio zibethinus HOM05D005025 ORTHO05D006499 1.5e-73 280.0 213 59.6
CiPaw.12G066500 Carya illinoinensis HOM05D005025 ORTHO05D006499 1.9e-73 279.6 213 57.7
Lj2A235G62 Lonicera japonica HOM05D005025 ORTHO05D006499 1.9e-73 279.6 214 58.4
CSS0033528 Camellia sinensis var. sinensis HOM05D005025 ORTHO05D006499 3.3e-73 278.9 213 58.7
Cfa012482 Carpinus fangiana HOM05D005025 ORTHO05D006499 3.3e-73 278.9 215 56.3
CsaV3_3G048940 Cucumis sativus L. HOM05D005025 ORTHO05D006499 5.6e-73 278.1 213 58.2
Thecc.03G306700 Theobroma cacao HOM05D005025 ORTHO05D006499 5.6e-73 278.1 213 59.2
Actinidia25983 Actinidia chinensis HOM05D005025 ORTHO05D006499 7.4e-73 277.7 213 58.7
PSO063G6878 Papaver somniferum HOM05D005025 ORTHO05D006499 9.6e-73 277.3 213 57.7
CAN.G1522.5 Capsicum annuum HOM05D005025 ORTHO05D006499 1.3e-72 276.9 215 57.2
Eucgr.E00258 Eucalyptus grandis HOM05D005025 ORTHO05D006499 1.3e-72 276.9 214 58.9
Hma1.2p1_0303F.1_g118820 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 1.3e-72 276.9 213 58.7
Haze_08183 Corylus avellana HOM05D005025 ORTHO05D006499 1.6e-72 276.6 215 56.3
TAR636G2380 Trochodendron aralioides HOM05D005025 ORTHO05D006499 2.1e-72 276.2 213 56.8
Oeu028876.1 Olea europaea HOM05D005025 ORTHO05D006499 3.7e-72 275.4 213 58.7
Sc22g0001670 Simmondsia chinensis HOM05D005025 ORTHO05D006499 3.7e-72 275.4 213 56.8
MELO3C003429.2 Cucumis melo HOM05D005025 ORTHO05D006499 4.8e-72 275.0 213 57.7
SEGI_40920 Sequoiadendron giganteum HOM05D005025 ORTHO05D006499 8.1e-72 274.2 214 60.7
Potri.001G139400 Populus trichocarpa HOM05D005025 ORTHO05D006499 1.8e-71 273.1 213 56.8
Prupe.5G031400 Prunus persica HOM05D005025 ORTHO05D006499 1.8e-71 273.1 214 57.0
Solyc08g005150.3 Solanum lycopersicum HOM05D005025 ORTHO05D006499 1.8e-71 273.1 215 55.3
PGSC0003DMG400017847 Solanum tuberosum HOM05D005025 ORTHO05D006499 2.4e-71 272.7 215 55.8
THA.LOC104814425 Tarenaya hassleriana HOM05D005025 ORTHO05D006499 2.4e-71 272.7 213 57.7
Sopen08g001160 Solanum pennellii HOM05D005025 ORTHO05D006499 4.0e-71 271.9 215 55.3
Peaxi162Scf00045g00139 Petunia axillaris HOM05D005025 ORTHO05D006499 5.3e-71 271.6 215 55.8
HanXRQChr17g0538241 Helianthus annuus HOM05D005025 ORTHO05D006499 6.9e-71 271.2 213 56.3
Sed0025660 Sechium edule HOM05D005025 ORTHO05D006499 6.9e-71 271.2 214 56.5
Cpa.g.sc90.18 Carica papaya HOM05D005025 ORTHO05D006499 1.2e-70 270.4 213 56.3
Cc08_g03170 Coffea canephora HOM05D005025 ORTHO05D006499 1.5e-70 270.0 213 56.8
Gohir.D12G209700 Gossypium hirsutum HOM05D005025 ORTHO05D006499 1.5e-70 270.0 213 57.3
Gohir.A12G207300 Gossypium hirsutum HOM05D005025 ORTHO05D006499 2.0e-70 269.6 213 57.7
Gorai.008G225300 Gossypium raimondii HOM05D005025 ORTHO05D006499 2.0e-70 269.6 213 57.3
Nitab4.5_0000556g0080 Nicotiana tabacum HOM05D005025 ORTHO05D006499 2.0e-70 269.6 215 55.3
ECA246G3826 Erigeron canadensis HOM05D005025 ORTHO05D006499 2.6e-70 269.2 211 57.8
Migut.A01080 Erythranthe guttata HOM05D005025 ORTHO05D006499 2.6e-70 269.2 213 56.3
Nitab4.5_0010978g0020 Nicotiana tabacum HOM05D005025 ORTHO05D006499 4.5e-70 268.5 215 54.9
QL12p004468 Quercus lobata HOM05D005025 ORTHO05D006499 4.5e-70 268.5 213 58.2
PSO782G1926 Papaver somniferum HOM05D005025 ORTHO05D006499 5.8e-70 268.1 216 56.5
AUR62007316 Chenopodium quinoa HOM05D005025 ORTHO05D006499 7.6e-70 267.7 213 57.3
Nn3g19421 Nelumbo nucifera HOM05D005025 ORTHO05D006499 1.0e-69 267.3 213 54.9
MD06G1037600 Malus domestica HOM05D005025 ORTHO05D006499 1.3e-69 266.9 213 55.9
unitig_32.g11504 Utricularia gibba HOM05D005025 ORTHO05D006499 2.2e-69 266.2 214 57.9
Ciclev10011251m.g Citrus clementina HOM05D005025 ORTHO05D006499 3.8e-69 265.4 213 55.9
CARHR031710 Cardamine hirsuta HOM05D005025 ORTHO05D006499 1.4e-68 263.5 219 55.7
Rhsim11G0018800 Rhododendron simsii HOM05D005025 ORTHO05D006499 1.4e-68 263.5 212 54.7
AT1G32340 Arabidopsis thaliana HOM05D005025 ORTHO05D006499 3.2e-68 262.3 219 54.8
MSTRG.12173 Avicennia marina HOM05D005025 ORTHO05D006499 4.2e-68 261.9 215 54.9
Lsat_1_v5_gn_3_18960 Lactuca sativa HOM05D005025 ORTHO05D006499 4.2e-68 261.9 216 54.6
Carub.0001s3071 Capsella rubella HOM05D005025 ORTHO05D006499 5.5e-68 261.5 219 54.3
TAR629G1702 Trochodendron aralioides HOM05D005025 ORTHO05D006499 5.5e-68 261.5 213 53.5
DCAR_032084 Daucus carota HOM05D005025 ORTHO05D006499 9.3e-68 260.8 212 52.8
SGA_v2.0_scaffold36G14307 Striga asiatica HOM05D005025 ORTHO05D006499 2.1e-67 259.6 215 56.3
arahy.Tifrunner.gnm1.ann1.7UXP3N Arachis hypogaea HOM05D005025 ORTHO05D006499 3.5e-67 258.8 216 56.0
arahy.Tifrunner.gnm1.ann1.U5ZP0C Arachis hypogaea HOM05D005025 ORTHO05D006499 3.5e-67 258.8 216 56.0
BcaB03g13744 Brassica carinata HOM05D005025 ORTHO05D006499 1.8e-66 256.5 219 53.9
DCAR_021701 Daucus carota HOM05D005025 ORTHO05D006499 6.7e-66 254.6 208 52.4
Medtr5g029700 Medicago truncatula HOM05D005025 ORTHO05D006499 1.5e-65 253.4 217 54.4
Glyma.09G206500 Glycine max HOM05D005025 ORTHO05D006499 1.9e-65 253.1 216 54.6
Sp1g28560 Schrenkiella parvula HOM05D005025 ORTHO05D006499 3.3e-65 252.3 219 53.0
TWI60G0579 Tripterygium wilfordii HOM05D005025 ORTHO05D006499 5.7e-65 251.5 213 56.8
Thhalv10007022m.g Eutrema salsugineum HOM05D005025 ORTHO05D006499 7.4e-65 251.1 221 54.3
Cpa.g.sc90.19 Carica papaya HOM05D005025 ORTHO05D006499 2.8e-64 249.2 214 51.9
BcaC05g27877 Brassica carinata HOM05D005025 ORTHO05D006499 3.7e-64 248.8 219 53.0
C05p38840 Brassica napus HOM05D005025 ORTHO05D006499 3.7e-64 248.8 219 53.0
A05p24990 Brassica napus HOM05D005025 ORTHO05D006499 4.8e-64 248.4 219 53.4
BraA05t21382Z Brassica rapa HOM05D005025 ORTHO05D006499 4.8e-64 248.4 219 53.4
Lalb_Chr05g0215861 Lupinus albus HOM05D005025 ORTHO05D006499 4.8e-64 248.4 216 53.2
CAN.G1522.10 Capsicum annuum HOM05D005025 ORTHO05D006499 8.2e-64 247.7 215 53.5
VMungo1215G2298 Vigna mungo HOM05D005025 ORTHO05D006499 8.2e-64 247.7 216 54.2
Phvul.002G138700 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 1.1e-63 247.3 216 54.2
Carub.0245s0001 Capsella rubella HOM05D005025 ORTHO05D006499 4.1e-63 245.4 220 52.7
HanXRQChr17g0538251 Helianthus annuus HOM05D005025 ORTHO05D006499 2.6e-62 242.7 214 50.9
TPR.G8112 Trifolium pratense HOM05D005025 ORTHO05D006499 2.6e-62 242.7 218 50.5
CANSAT21G2346 Cannabis sativa HOM05D005025 ORTHO05D006499 7.2e-60 234.6 215 53.0
FAN18G0203 Fragaria x ananassa HOM05D005025 ORTHO05D006499 9.3e-60 234.2 220 50.0
RcHm_v2.0_Chr7g0210351 Rosa chinensis HOM05D005025 ORTHO05D006499 9.3e-60 234.2 219 50.7
FAN18G0071 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.2e-59 233.8 220 50.0
Aa31LG2G13680 Aethionema arabicum HOM05D005025 ORTHO05D006499 3.5e-59 232.3 214 51.9
FvH4_5g22580 Fragaria vesca HOM05D005025 ORTHO05D006499 4.6e-59 231.9 220 49.5
FAN08G2980 Fragaria x ananassa HOM05D005025 ORTHO05D006499 6.7e-58 228.0 219 47.9
Psat2g137720 Pisum sativum HOM05D005025 ORTHO05D006499 3.7e-56 222.2 218 49.1
Mapoly0124s0022 Marchantia polymorpha HOM05D005025 ORTHO05D006499 2.6e-54 216.1 218 46.3
PSO782G4765 Papaver somniferum HOM05D005025 ORTHO05D006499 4.5e-54 215.3 220 48.2
Ca_08154_v3 Cicer arietinum L. HOM05D005025 ORTHO05D006499 6.5e-53 211.5 216 47.2
Pp3c6_18080 Physcomitrium patens HOM05D005025 ORTHO05D006499 8.5e-53 211.1 223 47.1
Zm00001eb251320 Zea mays HOM05D005025 ORTHO05D006499 9.4e-52 207.6 225 45.3
SMO358G0265 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 1.6e-51 206.8 214 45.3
Aqoxy3G02237 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 3.6e-51 205.7 170 54.1
Dinv28982 Davidia involucrata HOM05D005025 ORTHO05D006499 1.8e-50 203.4 169 55.6
ClCG09G011740 Citrullus lanatus HOM05D005025 ORTHO05D006499 2.3e-50 203.0 169 55.6
HanXRQChr17g0538221 Helianthus annuus HOM05D005025 ORTHO05D006499 3.0e-50 202.6 151 58.9
SalBow6G4293 Salvia bowleyana HOM05D005025 ORTHO05D006499 8.8e-50 201.1 176 53.4
Atru.chr6.1624 Acer truncatum HOM05D005025 ORTHO05D006499 1.7e-48 196.8 196 49.5
AUR62018689 Chenopodium quinoa HOM05D005025 ORTHO05D006499 2.4e-47 193.0 165 55.8
CARHR103750 Cardamine hirsuta HOM05D005025 ORTHO05D006499 4.1e-47 192.2 221 44.3
Aqoxy3G02374 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 2.0e-46 189.9 210 44.3
EL10Ac5g12057 Beta vulgaris HOM05D005025 ORTHO05D006499 2.6e-46 189.5 165 53.3
HPP92_025674 Vanilla planifolia HOM05D005025 ORTHO05D006499 3.4e-46 189.1 168 50.6
ATR0829G096 Amborella trichopoda HOM05D005025 ORTHO05D006499 5.0e-45 185.3 180 51.1
MCO11G741 Micromonas commoda HOM05D005025 ORTHO05D006499 1.4e-44 183.7 220 41.4
PSO104G0071 Papaver somniferum HOM05D005025 ORTHO05D006499 2.7e-43 179.5 231 39.8
PSO104G0167 Papaver somniferum HOM05D005025 ORTHO05D006499 2.7e-43 179.5 231 39.8
Sabra01G0108400 Salix brachista HOM05D005025 ORTHO05D006499 1.0e-42 177.6 202 44.1
PSO104G0015 Papaver somniferum HOM05D005025 ORTHO05D006499 1.8e-42 176.8 230 39.6
Cre01.g018900 Chlamydomonas reinhardtii HOM05D005025 ORTHO05D006499 4.8e-40 168.7 233 39.1
SMO008G0001 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 7.7e-38 161.4 148 47.3
COL.COLO4_16974 Corchorus olitorius HOM05D005025 ORTHO05D006499 1.0e-37 161.0 147 53.7
TPR.G8110 Trifolium pratense HOM05D005025 ORTHO05D006499 4.0e-34 149.1 141 51.8
Aqoxy3G02230 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 5.3e-31 138.7 168 41.1
CBR_g37671 Chara braunii HOM05D005025 ORTHO05D006499 7.7e-30 134.8 134 47.8
Ciclev10013841m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.7e-29 133.7 117 51.3
CBR_g40898 Chara braunii HOM05D005025 ORTHO05D006499 2.3e-26 123.2 128 46.9
AagrBONN_evm.TU.Sc2ySwM_344.5411 Anthoceros agrestis HOM05D005025 ORTHO05D006499 9.1e-23 111.3 140 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4817 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.0e-21 107.8 120 41.7
PSO384G4548 Papaver somniferum HOM05D005025 ORTHO05D006499 2.2e-21 106.7 128 43.0
PSO104G0107 Papaver somniferum HOM05D005025 ORTHO05D006499 1.4e-18 97.4 127 39.4
Aqoxy3G02236 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 4.9e-16 89.0 125 38.4
ATR0829G033 Amborella trichopoda HOM05D005025 ORTHO05D006499 7.0e-15 85.1 98 46.9
SMO111G0141 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 1.6e-14 84.0 112 41.1
Phvul.002G138550 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 1.9e-12 77.0 107 43.9
PSO729G0276 Papaver somniferum HOM05D005025 ORTHO05D006499 3.6e-11 72.8 94 43.6
Lj2g0014595 Lotus japonicus HOM05D005025 ORTHO05D006499 7.5e-09 65.1 44 65.9
SGA_v2.0_scaffold198G41083 Striga asiatica HOM05D005025 ORTHO05D006499 7.5e-09 65.1 44 59.1
Lj2g0005503 Lotus japonicus HOM05D005025 ORTHO05D006499 2.2e-08 63.5 45 60.0
Thhalv10017564m.g Eutrema salsugineum HOM05D000554 ORTHO05D000860 6.4e-08 62.0 111 34.2
CBR_g37201 Chara braunii HOM05D011976 ORTHO05D014012 1.1e-07 61.2 139 33.1
AL5G17160 Arabidopsis lyrata HOM05D000554 ORTHO05D002829 1.4e-07 60.8 128 29.7
FAN08G0094 Fragaria x ananassa HOM05D005025 ORTHO05D006499 2.4e-07 60.1 58 48.3
PSO541G5326 Papaver somniferum HOM05D000554 ORTHO05D000860 2.4e-07 60.1 139 29.5
PSO675G8228 Papaver somniferum HOM05D000554 ORTHO05D000860 2.4e-07 60.1 112 32.1
AagrBONN_evm.TU.Sc2ySwM_362.1886 Anthoceros agrestis HOM05D011976 ORTHO05D014012 4.1e-07 59.3 113 31.0
Thecc.09G069700 Theobroma cacao HOM05D000327 ORTHO05D000218 4.1e-07 59.3 123 32.5
AagrBONN_evm.TU.Sc2ySwM_344.3587 Anthoceros agrestis HOM05D005025 ORTHO05D006499 5.4e-07 58.9 58 39.7
AT3G27720 Arabidopsis thaliana HOM05D000554 ORTHO05D002829 7.0e-07 58.5 128 28.9
Mapoly0001s0538 Marchantia polymorpha HOM05D011976 ORTHO05D014012 7.0e-07 58.5 115 32.2
CARHR149180 Cardamine hirsuta HOM05D000554 ORTHO05D002829 9.2e-07 58.2 128 31.2
CBR_g72648 Chara braunii HOM05D011976 ORTHO05D014012 9.2e-07 58.2 139 27.3
Eucgr.I02157 Eucalyptus grandis HOM05D000327 ORTHO05D000218 1.6e-06 57.4 104 28.8
Os09g0419500 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 2.0e-06 57.0 119 31.1
MD15G1224100 Malus domestica HOM05D000327 ORTHO05D000218 2.7e-06 56.6 115 33.9
HPP92_019286 Vanilla planifolia HOM05D000327 ORTHO05D000218 2.7e-06 56.6 115 30.4
MD03G1111900 Malus domestica HOM05D000327 ORTHO05D000218 3.5e-06 56.2 94 35.1
MD02G1103200 Malus domestica HOM05D000327 ORTHO05D000218 4.6e-06 55.8 115 33.9
AL5G17150 Arabidopsis lyrata HOM05D000554 ORTHO05D002829 7.8e-06 55.1 106 32.1
GSVIVG01016056001 Vitis vinifera HOM05D000327 ORTHO05D000218 7.8e-06 55.1 114 31.6


User provided reference genes

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