Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.3e-84 314.3 157 100.0
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.8e-37 159.1 98 80.6
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.1e-36 157.1 99 78.8
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 3.1e-36 155.6 104 75.0
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 3.1e-36 155.6 96 82.3
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 4.1e-36 155.2 133 60.9
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 5.3e-36 154.8 135 62.2
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 9.1e-36 154.1 121 68.6
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 1.2e-35 153.7 102 74.5
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 1.6e-35 153.3 102 76.5
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 1.6e-35 153.3 102 76.5
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 1.6e-35 153.3 94 81.9
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 2.0e-35 152.9 104 75.0
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 2.0e-35 152.9 96 80.2
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 2.6e-35 152.5 104 75.0
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 3.5e-35 152.1 100 75.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 3.5e-35 152.1 132 62.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 3.5e-35 152.1 102 76.5
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 4.5e-35 151.8 96 78.1
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.5e-35 151.8 92 80.4
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.5e-35 151.8 92 80.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 4.5e-35 151.8 92 80.4
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 5.9e-35 151.4 94 80.9
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 5.9e-35 151.4 98 76.5
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 7.7e-35 151.0 102 75.5
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 7.7e-35 151.0 98 76.5
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 7.7e-35 151.0 96 79.2
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 7.7e-35 151.0 96 79.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 1.0e-34 150.6 101 73.3
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 1.0e-34 150.6 96 77.1
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 1.0e-34 150.6 96 78.1
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-34 150.6 96 78.1
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 1.0e-34 150.6 101 76.2
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 1.0e-34 150.6 96 79.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.0e-34 150.6 132 60.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.0e-34 150.6 91 81.3
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 1.3e-34 150.2 101 73.3
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 1.3e-34 150.2 101 73.3
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 1.3e-34 150.2 100 74.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 1.3e-34 150.2 96 78.1
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 1.3e-34 150.2 99 74.7
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 1.3e-34 150.2 96 77.1
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.3e-34 150.2 135 60.7
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.7e-34 149.8 96 78.1
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 2.2e-34 149.4 98 76.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 2.2e-34 149.4 96 77.1
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 2.9e-34 149.1 96 78.1
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 3.8e-34 148.7 94 78.7
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.8e-34 148.7 96 78.1
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 5.0e-34 148.3 102 70.6
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 5.0e-34 148.3 94 78.7
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 5.0e-34 148.3 91 80.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 6.5e-34 147.9 93 78.5
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 6.5e-34 147.9 91 79.1
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 6.5e-34 147.9 91 80.2
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 8.5e-34 147.5 98 74.5
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 8.5e-34 147.5 91 80.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 8.5e-34 147.5 96 77.1
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.5e-34 147.5 96 76.0
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 1.1e-33 147.1 96 77.1
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-33 147.1 125 64.8
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 1.1e-33 147.1 96 76.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 1.1e-33 147.1 96 76.0
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.5e-33 146.7 96 76.0
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.5e-33 146.7 98 72.4
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.9e-33 146.4 98 73.5
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 1.9e-33 146.4 91 79.1
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 2.5e-33 146.0 98 73.5
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 2.5e-33 146.0 90 78.9
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.5e-33 146.0 96 75.0
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 2.5e-33 146.0 96 75.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 3.2e-33 145.6 96 76.0
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 3.2e-33 145.6 96 75.0
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 3.2e-33 145.6 96 76.0
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 3.2e-33 145.6 96 76.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 4.2e-33 145.2 96 75.0
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 4.2e-33 145.2 90 80.0
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 4.2e-33 145.2 91 79.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-33 145.2 137 57.7
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 4.2e-33 145.2 91 78.0
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 5.5e-33 144.8 91 79.1
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 5.5e-33 144.8 124 60.5
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 5.5e-33 144.8 91 79.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 5.5e-33 144.8 91 78.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 5.5e-33 144.8 91 78.0
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 9.4e-33 144.1 91 78.0
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 1.6e-32 143.3 99 70.7
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 2.1e-32 142.9 91 74.7
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 2.7e-32 142.5 91 75.8
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 3.6e-32 142.1 91 78.0
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 4.7e-32 141.7 98 71.4
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 8.0e-32 141.0 86 81.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 1.4e-31 140.2 110 67.3
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 2.3e-31 139.4 89 75.3
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 2.3e-31 139.4 96 70.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.0e-31 139.0 110 68.2
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 4.0e-31 138.7 96 69.8
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 4.0e-31 138.7 89 73.0
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 4.0e-31 138.7 89 73.0
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 4.0e-31 138.7 89 73.0
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 4.0e-31 138.7 89 73.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 4.0e-31 138.7 89 73.0
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 4.0e-31 138.7 137 55.5
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 5.2e-31 138.3 91 73.6
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 6.7e-31 137.9 89 74.2
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 6.7e-31 137.9 91 71.4
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 8.8e-31 137.5 96 71.9
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 8.8e-31 137.5 101 66.3
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-30 136.3 135 54.8
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 2.6e-30 136.0 91 71.4
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.6e-30 136.0 137 53.3
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.6e-30 136.0 137 53.3
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 5.7e-30 134.8 131 55.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 1.3e-29 133.7 110 61.8
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 4.8e-29 131.7 91 70.3
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.8e-28 129.8 109 60.6
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 1.6e-27 126.7 125 56.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.7e-27 124.4 96 67.7
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 1.3e-26 123.6 98 65.3
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.2e-16 90.5 89 49.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 3.1e-12 75.9 146 40.4


User provided reference genes

Program Settings