Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 0.0e+00 1132.1 574 100.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 0.0e+00 1111.7 554 98.0
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 0.0e+00 1107.8 554 97.7
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.6e-309 1062.8 553 93.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 554 93.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 6.8e-307 1056.6 551 93.1
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 2.0e-306 1055.0 551 93.5
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 3.4e-306 1054.3 554 92.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.8e-306 1053.5 553 93.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 7.6e-306 1053.1 553 92.9
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.6e-306 1053.1 553 92.9
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 9.9e-306 1052.7 553 92.8
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 9.9e-306 1052.7 553 92.4
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.3e-305 1052.4 551 92.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.3e-305 1052.4 551 92.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.3e-305 1052.4 554 92.6
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 554 92.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 553 92.8
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.9e-305 1051.2 553 92.6
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 3.8e-305 1050.8 554 92.2
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.8e-305 1050.8 553 92.8
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 4.9e-305 1050.4 553 92.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 4.9e-305 1050.4 552 91.8
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 552 92.6
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 552 92.6
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 551 92.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 553 92.4
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 8.4e-305 1049.7 553 92.6
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 8.4e-305 1049.7 553 92.4
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 553 92.4
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 553 92.4
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 552 92.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.4e-304 1048.9 553 92.2
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.9e-304 1048.5 552 92.4
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 552 92.4
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 551 92.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 553 92.6
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.2e-304 1047.7 551 92.7
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.2e-304 1047.7 552 92.2
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.2e-304 1047.7 553 92.6
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 4.2e-304 1047.3 553 92.4
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.2e-304 1047.3 553 92.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 551 92.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 553 92.2
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 9.3e-304 1046.2 552 92.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 9.3e-304 1046.2 553 91.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 554 92.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 551 92.2
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 2.1e-303 1045.0 553 92.2
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 2.1e-303 1045.0 552 91.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 2.7e-303 1044.6 553 91.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.7e-303 1044.6 552 91.5
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 3.5e-303 1044.3 553 91.5
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 553 91.9
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 554 91.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 553 91.5
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 2.3e-302 1041.6 551 91.8
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 3.0e-302 1041.2 553 91.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 5.1e-302 1040.4 553 91.1
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.1e-302 1040.4 552 91.5
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 8.7e-302 1039.6 553 91.5
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-301 1039.3 551 91.7
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 3.3e-301 1037.7 553 90.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.3e-301 1037.7 551 91.7
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 553 91.0
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 552 91.3
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 551 91.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 7.3e-301 1036.6 574 88.9
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 7.3e-301 1036.6 553 90.6
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 9.6e-301 1036.2 554 90.4
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.3e-300 1035.8 554 90.6
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 554 90.4
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 554 90.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 552 90.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.6e-300 1034.2 552 90.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 4.8e-300 1033.9 553 90.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 8.1e-300 1033.1 554 90.1
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 8.1e-300 1033.1 554 90.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 585 87.5
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 553 90.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.4e-299 1032.3 550 90.0
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 5.3e-299 1030.4 554 89.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 5.3e-299 1030.4 554 89.9
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 5.3e-299 1030.4 587 87.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 9.9e-298 1026.2 523 94.6
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 7.1e-296 1020.0 606 83.8
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 553 89.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-294 1015.4 552 88.9
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 552 88.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 552 88.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.8e-292 1008.1 583 85.9
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 7.6e-290 1000.0 540 88.7
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.9e-288 995.3 562 87.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.6e-282 974.9 523 89.9
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.4e-280 969.1 552 87.3
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 9.6e-277 956.4 489 93.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.3e-270 935.3 487 93.4
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 4.6e-263 911.0 456 95.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 8.8e-262 906.7 540 80.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 4.7e-255 884.4 554 80.5
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.2e-248 861.7 544 77.6
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.0e-235 817.4 553 75.4
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 4.5e-234 814.7 408 95.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.5e-229 799.7 555 75.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.0e-226 789.3 528 77.1
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.3e-225 786.6 414 93.2
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 8.6e-225 783.9 523 76.7
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.1e-223 779.2 523 76.3
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-221 773.5 501 76.8
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.4e-219 765.8 553 71.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 7.5e-213 744.2 553 70.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.9e-212 741.5 553 70.9
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-208 730.3 550 68.7
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.7e-204 715.3 378 92.3
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 6.6e-193 677.9 501 71.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.2e-187 659.1 331 94.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 6.7e-169 598.2 312 90.4
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.7e-153 544.7 500 60.8
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.4e-142 510.8 262 92.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.5e-141 505.8 545 53.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.5e-139 498.8 462 58.7
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.0e-129 466.1 503 54.1
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.8e-127 459.1 289 81.3
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.8e-126 457.2 293 77.8
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 4.5e-125 452.6 385 63.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.4e-123 444.9 373 61.7
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.7e-122 442.6 246 89.4
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 8.8e-121 438.3 327 70.0
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 6.5e-116 422.2 553 47.2
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.8e-113 414.1 350 62.0
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 9.2e-110 401.7 196 95.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.9e-107 394.0 225 88.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-98 364.8 246 76.0
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-95 354.4 214 79.9
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.4e-94 351.3 267 66.7
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-91 341.3 183 86.3
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.2e-90 338.2 167 95.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-86 322.8 287 63.4
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.3e-84 318.2 154 96.1
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.3e-83 313.5 160 91.2
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.4e-81 308.1 158 91.8
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.4e-80 303.1 308 58.1
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.4e-62 245.0 165 78.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 9.3e-62 242.3 148 85.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.9e-60 236.9 147 82.3
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-53 213.8 123 87.0
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.8e-49 201.4 140 76.4
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.4e-46 191.8 105 88.6
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 5.1e-44 183.3 274 46.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-42 177.9 148 63.5
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-41 173.7 113 77.0
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.5e-32 145.2 98 76.5
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-27 127.5 75 85.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 9.1e-25 119.4 73 83.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 8.5e-23 112.8 133 54.1
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-22 111.3 55 98.2
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-19 101.7 58 86.2
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 1.1e-17 95.9 70 75.7
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.3e-17 93.6 53 83.0
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.1e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-16 92.0 47 91.5
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-14 84.7 44 84.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 7.2e-14 83.2 59 69.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-13 82.0 88 56.8
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 6.7e-12 76.6 49 73.5


User provided reference genes

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