Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0433000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D299973 3.0e-164 582.0 345 100.0
Os10g0423800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 7.6e-19 99.0 114 51.8
Os10g0423300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.3e-18 98.2 91 54.9
Os10g0423400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.5e-18 95.9 100 50.0
Os11g0630900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D298901 5.5e-17 92.8 223 35.0
Os10g0425700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.5e-16 90.1 91 51.6
Os10g0425900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.5e-16 90.1 102 48.0
Zm00001eb222950 Zea mays HOM05D000563 ORTHO05D000536 7.9e-16 89.0 95 51.6
Os10g0429300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.9e-15 86.7 93 47.3
Zm00001eb065610 Zea mays HOM05D000563 ORTHO05D000536 3.9e-15 86.7 102 48.0
Os10g0427300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.7e-15 85.9 103 49.5
Zm00001eb047910 Zea mays HOM05D000563 ORTHO05D000536 6.7e-15 85.9 101 48.5
Os10g0423900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.5e-14 84.0 90 50.0
Zm00001eb049070 Zea mays HOM05D000563 ORTHO05D000536 1.3e-13 81.6 125 41.6
Zm00001eb050730 Zea mays HOM05D000563 ORTHO05D000536 4.8e-13 79.7 116 43.1
Os11g0631100 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.4e-12 77.4 98 43.9
Os02g0309200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.3e-12 76.3 92 43.5
Os11g0630700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.3e-12 76.3 116 38.8
Os10g0428900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.0e-12 75.5 88 45.5
Os10g0434000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.0e-12 75.5 104 44.2
Os10g0434200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.5e-11 74.7 94 47.9
Os10g0435400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 7.6e-11 72.4 93 46.2
Os10g0429600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.3e-10 71.6 113 38.9
Solyc01g080250.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 1.7e-10 71.2 120 35.8
Sopen01g032030 Solanum pennellii HOM05D000563 ORTHO05D000536 1.7e-10 71.2 120 35.8
Os02g0311150 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.9e-10 70.5 90 43.3
Os02g0309500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.8e-10 70.1 90 42.2
FAN20G2590 Fragaria x ananassa HOM05D000563 ORTHO05D000536 5.0e-10 69.7 102 42.2
Os02g0310500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.0e-10 69.7 96 44.8
FAN24G2483 Fragaria x ananassa HOM05D000563 ORTHO05D000536 6.5e-10 69.3 102 41.2
Nitab4.5_0000732g0190 Nicotiana tabacum HOM05D000563 ORTHO05D000536 8.5e-10 68.9 118 35.6
HanXRQChr15g0466501 Helianthus annuus HOM05D000563 ORTHO05D000536 1.9e-09 67.8 103 39.8
THA.LOC104802741 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 2.5e-09 67.4 105 41.9
TAR362G1116 Trochodendron aralioides HOM05D000563 ORTHO05D000536 2.5e-09 67.4 93 40.9
vmacro14941 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 3.2e-09 67.0 104 38.5
Nitab4.5_0002592g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 4.2e-09 66.6 102 37.3
Os10g0425400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.2e-09 66.6 77 50.6
PGSC0003DMG400004349 Solanum tuberosum HOM05D000563 ORTHO05D000536 5.5e-09 66.2 120 35.0
BraA03t10244Z Brassica rapa HOM05D000563 ORTHO05D000536 9.3e-09 65.5 99 40.4
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.2e-08 65.1 96 39.6
Rhsim13G0022300 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.2e-08 65.1 96 38.5
A03p09250 Brassica napus HOM05D000563 ORTHO05D000536 1.6e-08 64.7 102 40.2
BolC5t34758H Brassica oleracea HOM05D000563 ORTHO05D000536 1.6e-08 64.7 100 39.0
CAN.G522.3 Capsicum annuum HOM05D000563 ORTHO05D000536 1.6e-08 64.7 120 33.3
Oeu047884.2 Olea europaea HOM05D000563 ORTHO05D000536 1.6e-08 64.7 96 39.6
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 2.1e-08 64.3 102 37.3
BcaB01g05286 Brassica carinata HOM05D000563 ORTHO05D000536 2.7e-08 63.9 102 38.2
DCAR_002421 Daucus carota HOM05D000563 ORTHO05D000536 2.7e-08 63.9 93 39.8
THA.LOC104820791 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 2.7e-08 63.9 95 37.9
THA.LOC104822314 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 2.7e-08 63.9 103 38.8
BcaB01g04880 Brassica carinata HOM05D000563 ORTHO05D000536 3.6e-08 63.5 112 35.7
C03p10780 Brassica napus HOM05D000563 ORTHO05D000536 3.6e-08 63.5 100 39.0
Manes.01G210400 Manihot esculenta HOM05D000563 ORTHO05D000536 3.6e-08 63.5 91 39.6
QL12p022659 Quercus lobata HOM05D000563 ORTHO05D000536 3.6e-08 63.5 94 38.3
MSTRG.21578 Avicennia marina HOM05D000563 ORTHO05D000536 4.6e-08 63.2 96 39.6
CANSAT25G2118 Cannabis sativa HOM05D000563 ORTHO05D000536 4.6e-08 63.2 90 40.0
Lsat_1_v5_gn_9_4501 Lactuca sativa HOM05D000563 ORTHO05D000536 4.6e-08 63.2 91 40.7
Peaxi162Scf00095g00912 Petunia axillaris HOM05D000563 ORTHO05D000536 4.6e-08 63.2 91 39.6
Peaxi162Scf00978g00217 Petunia axillaris HOM05D000563 ORTHO05D000536 4.6e-08 63.2 102 36.3
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 4.6e-08 63.2 103 36.9
ECA248G0393 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.1e-08 62.8 102 37.3
Lj6C663T23 Lonicera japonica HOM05D000563 ORTHO05D000536 6.1e-08 62.8 105 39.0
MD03G1269700 Malus domestica HOM05D000563 ORTHO05D000536 6.1e-08 62.8 92 41.3
MD11G1290500 Malus domestica HOM05D000563 ORTHO05D000536 6.1e-08 62.8 92 41.3
Zm00001eb047620 Zea mays HOM05D000563 ORTHO05D000536 6.1e-08 62.8 75 44.0
CSS0010506 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 7.9e-08 62.4 103 36.9
AUR62030045 Chenopodium quinoa HOM05D000563 ORTHO05D000536 7.9e-08 62.4 104 35.6
Oeu014747.2 Olea europaea HOM05D000563 ORTHO05D000536 7.9e-08 62.4 94 39.4
Os10g0424400 Oryza sativa ssp. japonica HOM05D062388 ORTHO05D297002 7.9e-08 62.4 112 38.4
QL09p050502 Quercus lobata HOM05D000563 ORTHO05D000536 7.9e-08 62.4 85 40.0
BraA05t22897Z Brassica rapa HOM05D000563 ORTHO05D000536 1.0e-07 62.0 100 38.0
Aa31LG11G10730 Aethionema arabicum HOM05D000563 ORTHO05D000536 1.4e-07 61.6 103 37.9
Aa31LG5G16700 Aethionema arabicum HOM05D000563 ORTHO05D000536 1.4e-07 61.6 105 37.1
AUR62002628 Chenopodium quinoa HOM05D000563 ORTHO05D000536 1.4e-07 61.6 104 35.6
Lsat_1_v5_gn_8_109901 Lactuca sativa HOM05D000563 ORTHO05D000536 1.4e-07 61.6 92 38.0
Peaxi162Scf00980g00017 Petunia axillaris HOM05D000563 ORTHO05D000536 1.4e-07 61.6 102 38.2
Prupe.8G245800 Prunus persica HOM05D000563 ORTHO05D000536 1.4e-07 61.6 91 40.7
QL09p050724 Quercus lobata HOM05D000563 ORTHO05D000536 1.4e-07 61.6 85 40.0
BcaC05g29798 Brassica carinata HOM05D000563 ORTHO05D000536 1.8e-07 61.2 100 38.0
BolC3t13551H Brassica oleracea HOM05D000563 ORTHO05D000536 1.8e-07 61.2 102 37.3
HanXRQChr01g0002431 Helianthus annuus HOM05D000563 ORTHO05D000536 1.8e-07 61.2 96 36.5
Manes.05G073000 Manihot esculenta HOM05D000563 ORTHO05D000536 1.8e-07 61.2 88 39.8
PSO384G0559 Papaver somniferum HOM05D000563 ORTHO05D000536 1.8e-07 61.2 87 37.9
Peaxi162Scf00050g02418 Petunia axillaris HOM05D000563 ORTHO05D000536 1.8e-07 61.2 92 35.9
Solyc01g009060.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 1.8e-07 61.2 93 35.5
Solyc11g072070.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 1.8e-07 61.2 93 35.5
Sopen01g004550 Solanum pennellii HOM05D000563 ORTHO05D000536 1.8e-07 61.2 93 35.5
Sopen11g029720 Solanum pennellii HOM05D000563 ORTHO05D000536 1.8e-07 61.2 93 35.5
PGSC0003DMG400027397 Solanum tuberosum HOM05D000563 ORTHO05D000536 1.8e-07 61.2 92 35.9
vmacro02547 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 1.8e-07 61.2 90 40.0
BcaB08g36629 Brassica carinata HOM05D000563 ORTHO05D000536 2.3e-07 60.8 107 37.4
MD13G1181000 Malus domestica HOM05D000563 ORTHO05D000536 2.3e-07 60.8 96 40.6
MD16G1181700 Malus domestica HOM05D000563 ORTHO05D000536 2.3e-07 60.8 96 40.6
Nitab4.5_0000428g0100 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.3e-07 60.8 92 35.9
Nitab4.5_0002300g0090 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.3e-07 60.8 92 35.9
QL12p022816 Quercus lobata HOM05D000563 ORTHO05D000536 2.3e-07 60.8 85 41.2
PGSC0003DMG400022701 Solanum tuberosum HOM05D000563 ORTHO05D000536 2.3e-07 60.8 92 35.9
SGA_v2.0_scaffold172G39037 Striga asiatica HOM05D000563 ORTHO05D000536 2.3e-07 60.8 101 38.6
Aa31LG11G11640 Aethionema arabicum HOM05D000563 ORTHO05D000536 3.0e-07 60.5 97 35.1
Thhalv10020850m.g Eutrema salsugineum HOM05D000563 ORTHO05D000536 3.0e-07 60.5 105 37.1
Nitab4.5_0002567g0100 Nicotiana tabacum HOM05D000563 ORTHO05D000536 3.0e-07 60.5 92 35.9
Nitab4.5_0008289g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 3.0e-07 60.5 92 35.9
Sp6g25390 Schrenkiella parvula HOM05D000563 ORTHO05D000536 3.0e-07 60.5 102 38.2
CAN.G651.14 Capsicum annuum HOM05D000563 ORTHO05D000536 3.9e-07 60.1 102 35.3
Dinv44471 Davidia involucrata HOM05D000563 ORTHO05D000536 3.9e-07 60.1 91 38.5
A03p34550 Brassica napus HOM05D000563 ORTHO05D000536 5.1e-07 59.7 100 38.0
BraA03t12632Z Brassica rapa HOM05D000563 ORTHO05D000536 5.1e-07 59.7 100 38.0
PSO304G0006 Papaver somniferum HOM05D000563 ORTHO05D000536 5.1e-07 59.7 87 36.8
VMungo1383G1494 Vigna mungo HOM05D000563 ORTHO05D000536 5.1e-07 59.7 104 35.6
BolC3t16483H Brassica oleracea HOM05D000563 ORTHO05D000536 6.7e-07 59.3 111 37.8
CARHR194000 Cardamine hirsuta HOM05D000563 ORTHO05D000536 6.7e-07 59.3 105 36.2
CiPaw.07G094900 Carya illinoinensis HOM05D000563 ORTHO05D000536 6.7e-07 59.3 88 38.6
ECA236G1975 Erigeron canadensis HOM05D000563 ORTHO05D000536 6.7e-07 59.3 105 34.3
Prupe.1G149100 Prunus persica HOM05D000563 ORTHO05D000536 6.7e-07 59.3 104 38.5
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 6.7e-07 59.3 105 34.3
Carub.0003s0563 Capsella rubella HOM05D000563 ORTHO05D000536 8.8e-07 58.9 105 37.1
Thhalv10013699m.g Eutrema salsugineum HOM05D000563 ORTHO05D000536 8.8e-07 58.9 102 38.2
Lj2C1179G14 Lonicera japonica HOM05D000563 ORTHO05D000536 1.1e-06 58.5 88 40.9
PSO384G1891 Papaver somniferum HOM05D000563 ORTHO05D000536 1.1e-06 58.5 87 37.9
Rhsim09G0168400 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.1e-06 58.5 92 39.1
Actinidia12858 Actinidia chinensis HOM05D000563 ORTHO05D000536 1.5e-06 58.2 81 40.7
AL3G17050 Arabidopsis lyrata HOM05D000563 ORTHO05D000536 1.5e-06 58.2 105 36.2
AL6G30350 Arabidopsis lyrata HOM05D000563 ORTHO05D000536 1.5e-06 58.2 103 36.9
AT5G19000 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 1.5e-06 58.2 103 36.9
BcaC01g04328 Brassica carinata HOM05D000563 ORTHO05D000536 1.5e-06 58.2 111 36.9
A05p41780 Brassica napus HOM05D000563 ORTHO05D000536 1.5e-06 58.2 100 38.0
CiPaw.07G095000 Carya illinoinensis HOM05D000563 ORTHO05D000536 1.5e-06 58.2 88 38.6
DCAR_030589 Daucus carota HOM05D000563 ORTHO05D000536 1.5e-06 58.2 93 34.4
PGSC0003DMG400003837 Solanum tuberosum HOM05D000563 ORTHO05D000536 1.5e-06 58.2 89 36.0
AT3G06190 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 1.9e-06 57.8 105 36.2
A10p20690 Brassica napus HOM05D000563 ORTHO05D000536 1.9e-06 57.8 106 36.8
BraA10t44132Z Brassica rapa HOM05D000563 ORTHO05D000536 1.9e-06 57.8 106 36.8
Carub.0006s1731 Capsella rubella HOM05D000563 ORTHO05D000536 1.9e-06 57.8 103 35.9
CARHR080710 Cardamine hirsuta HOM05D000563 ORTHO05D000536 1.9e-06 57.8 105 36.2
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 1.9e-06 57.8 88 38.6
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 1.9e-06 57.8 88 38.6
Nitab4.5_0006874g0040 Nicotiana tabacum HOM05D000563 ORTHO05D000536 1.9e-06 57.8 87 36.8
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.9e-06 57.8 99 38.4
PSO414G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 1.9e-06 57.8 87 36.8
PSO714G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 1.9e-06 57.8 87 36.8
Phvul.001G104200 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 1.9e-06 57.8 90 38.9
Sp3g05130 Schrenkiella parvula HOM05D000563 ORTHO05D000536 1.9e-06 57.8 105 36.2
BcaC05g30046 Brassica carinata HOM05D000563 ORTHO05D000536 2.5e-06 57.4 101 36.6
PSO729G0037 Papaver somniferum HOM05D000563 ORTHO05D000536 2.5e-06 57.4 91 36.3
Solyc09g072980.2 Solanum lycopersicum HOM05D000563 ORTHO05D000536 2.5e-06 57.4 89 36.0
Sopen09g028790 Solanum pennellii HOM05D000563 ORTHO05D000536 2.5e-06 57.4 89 36.0
C03p42020 Brassica napus HOM05D000563 ORTHO05D000536 3.3e-06 57.0 91 38.5
Nitab4.5_0001323g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 3.3e-06 57.0 87 36.8
vmacro10216 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 3.3e-06 57.0 92 38.0
CAN.G1679.6 Capsicum annuum HOM05D000563 ORTHO05D000536 4.3e-06 56.6 87 35.6
Hma1.2p1_1644F.1_g295280 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 4.3e-06 56.6 92 38.0
PSO478G2779 Papaver somniferum HOM05D000563 ORTHO05D000536 4.3e-06 56.6 89 37.1
Sed0005585 Sechium edule HOM05D000563 ORTHO05D000536 4.3e-06 56.6 103 35.0
BcaB04g21323 Brassica carinata HOM05D000563 ORTHO05D000536 5.7e-06 56.2 96 36.5
BcaC09g47876 Brassica carinata HOM05D000563 ORTHO05D000536 5.7e-06 56.2 91 37.4
BolC1t05637H Brassica oleracea HOM05D000563 ORTHO05D000536 5.7e-06 56.2 91 37.4
BraA01t04451Z Brassica rapa HOM05D000563 ORTHO05D000536 5.7e-06 56.2 91 37.4
Mapoly0047s0089 Marchantia polymorpha HOM05D000563 ORTHO05D000536 5.7e-06 56.2 104 34.6
SEGI_22399 Sequoiadendron giganteum HOM05D000563 ORTHO05D000536 5.7e-06 56.2 107 32.7
Aa31LG11G11630 Aethionema arabicum HOM05D000563 ORTHO05D000536 7.4e-06 55.8 78 38.5
BcaB03g14657 Brassica carinata HOM05D000563 ORTHO05D000536 7.4e-06 55.8 102 36.3
C05p61020 Brassica napus HOM05D000563 ORTHO05D000536 7.4e-06 55.8 95 35.8
Os08g0406600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.7e-06 55.5 93 34.4
Os11g0622600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.7e-06 55.5 97 40.2
PSO384G0686 Papaver somniferum HOM05D000563 ORTHO05D000536 9.7e-06 55.5 86 32.6


User provided reference genes

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