Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.0e-58 228.8 109 100.0
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.7e-33 146.0 84 78.6
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 9.4e-32 140.2 84 75.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.0e-30 136.7 84 69.0
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-30 136.7 84 71.4
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.8e-30 136.0 84 71.4
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.8e-30 136.0 84 71.4
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.3e-30 135.6 84 72.6
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 4.0e-30 134.8 84 71.4
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 4.0e-30 134.8 84 71.4
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 4.0e-30 134.8 84 71.4
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 4.0e-30 134.8 84 71.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 5.2e-30 134.4 84 70.2
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 5.2e-30 134.4 84 71.4
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 6.8e-30 134.0 84 70.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 8.8e-30 133.7 84 71.4
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.5e-29 132.9 84 69.0
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.0e-29 132.5 84 69.0
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 2.0e-29 132.5 84 67.9
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.6e-29 132.1 84 69.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 2.6e-29 132.1 84 71.4
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.6e-29 132.1 84 67.9
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.6e-29 132.1 84 69.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.4e-29 131.7 84 70.2
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 3.4e-29 131.7 84 67.9
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 4.4e-29 131.3 84 67.9
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 5.7e-29 131.0 84 66.7
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 5.7e-29 131.0 106 60.4
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.5e-29 130.6 84 70.2
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 7.5e-29 130.6 84 67.9
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 7.5e-29 130.6 84 67.9
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 7.5e-29 130.6 84 70.2
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.8e-29 130.2 84 66.7
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 9.8e-29 130.2 84 70.2
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 9.8e-29 130.2 84 67.9
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-28 129.8 84 69.0
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.3e-28 129.8 84 69.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.7e-28 129.4 84 66.7
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.7e-28 129.4 84 65.5
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.7e-28 129.4 84 69.0
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.7e-28 129.4 84 66.7
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.2e-28 129.0 84 66.7
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 2.2e-28 129.0 84 66.7
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.2e-28 129.0 84 69.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 2.8e-28 128.6 84 67.9
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.7e-28 128.3 84 69.0
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 3.7e-28 128.3 84 66.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.7e-28 128.3 84 65.5
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.7e-28 128.3 84 66.7
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 4.8e-28 127.9 84 66.7
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 4.8e-28 127.9 85 69.4
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.8e-28 127.9 78 71.8
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-28 127.5 84 67.9
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.3e-28 127.5 84 66.7
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 8.3e-28 127.1 84 67.9
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.1e-27 126.7 84 65.5
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.1e-27 126.7 84 69.0
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-27 126.3 84 67.9
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-27 126.3 84 66.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.4e-27 126.3 84 66.7
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 66.7
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 66.7
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 65.5
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 65.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 66.7
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.8e-27 125.9 84 67.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 2.4e-27 125.6 84 67.9
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.4e-27 125.6 84 63.1
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.1e-27 125.2 84 65.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 3.1e-27 125.2 84 65.5
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.1e-27 125.2 84 67.9
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 3.1e-27 125.2 84 65.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 3.1e-27 125.2 84 64.3
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-27 124.8 84 67.9
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 7.0e-27 124.0 84 63.1
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.2e-26 123.2 84 63.1
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.2e-26 123.2 84 64.3
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.2e-26 123.2 84 65.5
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.6e-26 122.9 84 64.3
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.0e-26 122.5 84 64.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.0e-26 122.5 84 61.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.0e-26 122.5 84 65.5
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.0e-26 122.5 76 73.7
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.0e-26 122.5 84 64.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 2.7e-26 122.1 84 65.5
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 3.5e-26 121.7 84 63.1
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-26 121.3 84 65.5
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-26 121.3 84 65.5
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 4.5e-26 121.3 78 65.4
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.9e-26 120.9 80 66.2
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 1.3e-25 119.8 84 63.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 6.5e-25 117.5 78 62.8
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 8.6e-25 117.1 76 65.8
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.5e-24 115.5 113 51.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.5e-24 115.5 84 61.9
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 4.2e-24 114.8 82 61.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.5e-24 114.4 76 68.4
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 7.2e-24 114.0 88 59.1
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 7.2e-24 114.0 88 59.1
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.2e-24 114.0 84 60.7
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.2e-24 114.0 84 60.7
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 3.6e-23 111.7 84 58.3
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.0e-23 110.5 76 63.2
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-22 110.2 76 61.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 4.0e-22 108.2 84 53.6
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 4.0e-22 108.2 76 63.2
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.0e-21 105.9 76 61.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-21 104.8 76 59.2
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.7e-18 95.5 78 53.8
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-16 89.4 69 55.1
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-15 86.7 60 60.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 5.8e-13 77.8 75 40.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.2e-12 75.9 87 46.0
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.0e-10 69.3 43 69.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 2.7e-10 68.9 43 67.4
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.3e-09 65.9 75 42.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.3e-08 60.8 74 43.2
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 7.3e-08 60.8 43 60.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 7.3e-08 60.8 43 60.5
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.1e-06 57.0 39 61.5


User provided reference genes

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